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ANKRD46 (ankyrin repeat domain 46)

Identity

Other aliasANK-S
GENX-115279
HGNC (Hugo) ANKRD46
LocusID (NCBI) 157567
Atlas_Id 60354
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 101533000 and ends at 101572014 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD46 (8q22.2) / ODF1 (8q22.3)ANKRD46 (8q22.2) / TMEM222 (1p36.11)NUBPL (14q12) / ANKRD46 (8q22.2)
PSME2 (14q12) / ANKRD46 (8q22.2)RNF19A (8q22.2) / ANKRD46 (8q22.2)VPS13B (8q22.2) / ANKRD46 (8q22.2)
VPS13B ANKRD46RNF19A ANKRD46NUBPL ANKRD46
ANKRD46 ODF1ANKRD46 TMEM222

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD46   27229
Cards
Entrez_Gene (NCBI)ANKRD46  157567  ankyrin repeat domain 46
AliasesANK-S; GENX-115279
GeneCards (Weizmann)ANKRD46
Ensembl hg19 (Hinxton)ENSG00000186106 [Gene_View]  chr8:101533000-101572014 [Contig_View]  ANKRD46 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186106 [Gene_View]  chr8:101533000-101572014 [Contig_View]  ANKRD46 [Vega]
ICGC DataPortalENSG00000186106
TCGA cBioPortalANKRD46
AceView (NCBI)ANKRD46
Genatlas (Paris)ANKRD46
WikiGenes157567
SOURCE (Princeton)ANKRD46
Genetics Home Reference (NIH)ANKRD46
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD46  -     chr8:101533000-101572014 -  8q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD46  -     8q22.2   [Description]    (hg38-Dec_2013)
EnsemblANKRD46 - 8q22.2 [CytoView hg19]  ANKRD46 - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD46 [Mapview hg19]  ANKRD46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB077205 AK095235 AL832842 BC015811 BC035087
RefSeq transcript (Entrez)NM_001270377 NM_001270378 NM_001270379 NM_198401
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)ANKRD46
Cluster EST : UnigeneHs.530199 [ NCBI ]
CGAP (NCI)Hs.530199
Alternative Splicing GalleryENSG00000186106
Gene ExpressionANKRD46 [ NCBI-GEO ]   ANKRD46 [ EBI - ARRAY_EXPRESS ]   ANKRD46 [ SEEK ]   ANKRD46 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157567
GTEX Portal (Tissue expression)ANKRD46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W74
Splice isoforms : SwissVarQ86W74
PhosPhoSitePlusQ86W74
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD46
DMDM Disease mutations157567
Blocks (Seattle)ANKRD46
SuperfamilyQ86W74
Human Protein AtlasENSG00000186106
Peptide AtlasQ86W74
HPRD14103
IPIIPI00329014   IPI00418525   IPI00981457   IPI00981216   IPI00980086   IPI00980846   IPI00978723   
Protein Interaction databases
DIP (DOE-UCLA)Q86W74
IntAct (EBI)Q86W74
FunCoupENSG00000186106
BioGRIDANKRD46
STRING (EMBL)ANKRD46
ZODIACANKRD46
Ontologies - Pathways
QuickGOQ86W74
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkANKRD46
Atlas of Cancer Signalling NetworkANKRD46
Wikipedia pathwaysANKRD46
Orthology - Evolution
OrthoDB157567
GeneTree (enSembl)ENSG00000186106
Phylogenetic Trees/Animal Genes : TreeFamANKRD46
HOVERGENQ86W74
HOGENOMQ86W74
Homologs : HomoloGeneANKRD46
Homology/Alignments : Family Browser (UCSC)ANKRD46
Gene fusions - Rearrangements
Fusion: TCGAVPS13B ANKRD46
Fusion: TCGARNF19A ANKRD46
Fusion: TCGANUBPL ANKRD46
Fusion: TCGAANKRD46 ODF1
Fusion: TCGAANKRD46 TMEM222
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD46
dbVarANKRD46
ClinVarANKRD46
1000_GenomesANKRD46 
Exome Variant ServerANKRD46
ExAC (Exome Aggregation Consortium)ANKRD46 (select the gene name)
Genetic variants : HAPMAP157567
Genomic Variants (DGV)ANKRD46 [DGVbeta]
DECIPHER (Syndromes)8:101533000-101572014  ENSG00000186106
CONAN: Copy Number AnalysisANKRD46 
Mutations
ICGC Data PortalANKRD46 
TCGA Data PortalANKRD46 
Broad Tumor PortalANKRD46
OASIS PortalANKRD46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD46
DgiDB (Drug Gene Interaction Database)ANKRD46
DoCM (Curated mutations)ANKRD46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD46 (select a term)
intoGenANKRD46
Cancer3DANKRD46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD46
Genetic Testing Registry ANKRD46
NextProtQ86W74 [Medical]
TSGene157567
GENETestsANKRD46
Huge Navigator ANKRD46 [HugePedia]
snp3D : Map Gene to Disease157567
BioCentury BCIQANKRD46
ClinGenANKRD46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157567
Chemical/Pharm GKB GenePA142672613
Clinical trialANKRD46
Miscellaneous
canSAR (ICR)ANKRD46 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD46
EVEXANKRD46
GoPubMedANKRD46
iHOPANKRD46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:27 CET 2017

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