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ANKRD49 (ankyrin repeat domain 49)

Identity

Alias_symbol (synonym)FLJ20189
FGIF
GBIF
Other alias
HGNC (Hugo) ANKRD49
LocusID (NCBI) 54851
Atlas_Id 60355
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 94493987 and ends at 94499578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD49   25970
Cards
Entrez_Gene (NCBI)ANKRD49  54851  ankyrin repeat domain 49
AliasesFGIF; GBIF
GeneCards (Weizmann)ANKRD49
Ensembl hg19 (Hinxton)ENSG00000168876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168876 [Gene_View]  chr11:94493987-94499578 [Contig_View]  ANKRD49 [Vega]
ICGC DataPortalENSG00000168876
TCGA cBioPortalANKRD49
AceView (NCBI)ANKRD49
Genatlas (Paris)ANKRD49
WikiGenes54851
SOURCE (Princeton)ANKRD49
Genetics Home Reference (NIH)ANKRD49
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD49  -     chr11:94493987-94499578 +  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD49  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblANKRD49 - 11q21 [CytoView hg19]  ANKRD49 - 11q21 [CytoView hg38]
Mapping of homologs : NCBIANKRD49 [Mapview hg19]  ANKRD49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF025354 AK000196 AK000448 AK057696 AL833977
RefSeq transcript (Entrez)NM_017704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD49
Cluster EST : UnigeneHs.29052 [ NCBI ]
CGAP (NCI)Hs.29052
Alternative Splicing GalleryENSG00000168876
Gene ExpressionANKRD49 [ NCBI-GEO ]   ANKRD49 [ EBI - ARRAY_EXPRESS ]   ANKRD49 [ SEEK ]   ANKRD49 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54851
GTEX Portal (Tissue expression)ANKRD49
Human Protein AtlasENSG00000168876-ANKRD49 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVL7
Splice isoforms : SwissVarQ8WVL7
PhosPhoSitePlusQ8WVL7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD49
DMDM Disease mutations54851
Blocks (Seattle)ANKRD49
SuperfamilyQ8WVL7
Human Protein Atlas [tissue]ENSG00000168876-ANKRD49 [tissue]
Peptide AtlasQ8WVL7
HPRD16893
IPIIPI00549612   IPI01012647   IPI01009967   IPI01009484   IPI01010756   IPI01010289   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVL7
IntAct (EBI)Q8WVL7
FunCoupENSG00000168876
BioGRIDANKRD49
STRING (EMBL)ANKRD49
ZODIACANKRD49
Ontologies - Pathways
QuickGOQ8WVL7
Ontology : AmiGOprotein binding  nucleus  spermatogenesis  cell differentiation  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  spermatogenesis  cell differentiation  positive regulation of transcription, DNA-templated  
NDEx NetworkANKRD49
Atlas of Cancer Signalling NetworkANKRD49
Wikipedia pathwaysANKRD49
Orthology - Evolution
OrthoDB54851
GeneTree (enSembl)ENSG00000168876
Phylogenetic Trees/Animal Genes : TreeFamANKRD49
HOVERGENQ8WVL7
HOGENOMQ8WVL7
Homologs : HomoloGeneANKRD49
Homology/Alignments : Family Browser (UCSC)ANKRD49
Gene fusions - Rearrangements
Tumor Fusion PortalANKRD49
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD49
dbVarANKRD49
ClinVarANKRD49
1000_GenomesANKRD49 
Exome Variant ServerANKRD49
ExAC (Exome Aggregation Consortium)ENSG00000168876
GNOMAD BrowserENSG00000168876
Genetic variants : HAPMAP54851
Genomic Variants (DGV)ANKRD49 [DGVbeta]
DECIPHERANKRD49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD49 
Mutations
ICGC Data PortalANKRD49 
TCGA Data PortalANKRD49 
Broad Tumor PortalANKRD49
OASIS PortalANKRD49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD49
DgiDB (Drug Gene Interaction Database)ANKRD49
DoCM (Curated mutations)ANKRD49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD49 (select a term)
intoGenANKRD49
Cancer3DANKRD49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD49
MedgenANKRD49
Genetic Testing Registry ANKRD49
NextProtQ8WVL7 [Medical]
TSGene54851
GENETestsANKRD49
Target ValidationANKRD49
Huge Navigator ANKRD49 [HugePedia]
snp3D : Map Gene to Disease54851
BioCentury BCIQANKRD49
ClinGenANKRD49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54851
Chemical/Pharm GKB GenePA142672615
Clinical trialANKRD49
Miscellaneous
canSAR (ICR)ANKRD49 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD49
EVEXANKRD49
GoPubMedANKRD49
iHOPANKRD49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:58 CET 2017

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