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ANKRD53 (ankyrin repeat domain 53)

Identity

Alias_symbol (synonym)FLJ12056
FLJ36160
Other alias-
HGNC (Hugo) ANKRD53
LocusID (NCBI) 79998
Atlas_Id 60358
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 71205575 and ends at 71212629 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD53   25691
Cards
Entrez_Gene (NCBI)ANKRD53  79998  ankyrin repeat domain 53
Aliases
GeneCards (Weizmann)ANKRD53
Ensembl hg19 (Hinxton)ENSG00000144031 [Gene_View]  chr2:71205575-71212629 [Contig_View]  ANKRD53 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144031 [Gene_View]  chr2:71205575-71212629 [Contig_View]  ANKRD53 [Vega]
ICGC DataPortalENSG00000144031
TCGA cBioPortalANKRD53
AceView (NCBI)ANKRD53
Genatlas (Paris)ANKRD53
WikiGenes79998
SOURCE (Princeton)ANKRD53
Genetics Home Reference (NIH)ANKRD53
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD53  -     chr2:71205575-71212629 +  2p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD53  -     2p13.3   [Description]    (hg38-Dec_2013)
EnsemblANKRD53 - 2p13.3 [CytoView hg19]  ANKRD53 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIANKRD53 [Mapview hg19]  ANKRD53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022118 AK093479 BC035234 DB036445
RefSeq transcript (Entrez)NM_001115116 NM_024933
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)ANKRD53
Cluster EST : UnigeneHs.512744 [ NCBI ]
CGAP (NCI)Hs.512744
Alternative Splicing GalleryENSG00000144031
Gene ExpressionANKRD53 [ NCBI-GEO ]   ANKRD53 [ EBI - ARRAY_EXPRESS ]   ANKRD53 [ SEEK ]   ANKRD53 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79998
GTEX Portal (Tissue expression)ANKRD53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9V6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9V6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9V6
Splice isoforms : SwissVarQ8N9V6
PhosPhoSitePlusQ8N9V6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD53
DMDM Disease mutations79998
Blocks (Seattle)ANKRD53
SuperfamilyQ8N9V6
Human Protein AtlasENSG00000144031
Peptide AtlasQ8N9V6
HPRD07762
IPIIPI00410341   IPI00412425   IPI00925394   IPI00927878   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9V6
IntAct (EBI)Q8N9V6
FunCoupENSG00000144031
BioGRIDANKRD53
STRING (EMBL)ANKRD53
ZODIACANKRD53
Ontologies - Pathways
QuickGOQ8N9V6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD53
Atlas of Cancer Signalling NetworkANKRD53
Wikipedia pathwaysANKRD53
Orthology - Evolution
OrthoDB79998
GeneTree (enSembl)ENSG00000144031
Phylogenetic Trees/Animal Genes : TreeFamANKRD53
HOVERGENQ8N9V6
HOGENOMQ8N9V6
Homologs : HomoloGeneANKRD53
Homology/Alignments : Family Browser (UCSC)ANKRD53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD53
dbVarANKRD53
ClinVarANKRD53
1000_GenomesANKRD53 
Exome Variant ServerANKRD53
ExAC (Exome Aggregation Consortium)ANKRD53 (select the gene name)
Genetic variants : HAPMAP79998
Genomic Variants (DGV)ANKRD53 [DGVbeta]
DECIPHER (Syndromes)2:71205575-71212629  ENSG00000144031
CONAN: Copy Number AnalysisANKRD53 
Mutations
ICGC Data PortalANKRD53 
TCGA Data PortalANKRD53 
Broad Tumor PortalANKRD53
OASIS PortalANKRD53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD53
DgiDB (Drug Gene Interaction Database)ANKRD53
DoCM (Curated mutations)ANKRD53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD53 (select a term)
intoGenANKRD53
Cancer3DANKRD53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD53
Genetic Testing Registry ANKRD53
NextProtQ8N9V6 [Medical]
TSGene79998
GENETestsANKRD53
Huge Navigator ANKRD53 [HugePedia]
snp3D : Map Gene to Disease79998
BioCentury BCIQANKRD53
ClinGenANKRD53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79998
Chemical/Pharm GKB GenePA144596517
Clinical trialANKRD53
Miscellaneous
canSAR (ICR)ANKRD53 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD53
EVEXANKRD53
GoPubMedANKRD53
iHOPANKRD53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:28 CET 2017

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