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ANKRD55 (ankyrin repeat domain 55)

Identity

Alias_symbol (synonym)FLJ11795
Other alias-
HGNC (Hugo) ANKRD55
LocusID (NCBI) 79722
Atlas_Id 60360
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56099680 and ends at 56233359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKIRIN2 (6q15) / ANKRD55 (5q11.2)IL6ST (5q11.2) / ANKRD55 (5q11.2)SNX18 (5q11.2) / ANKRD55 (5q11.2)
AKIRIN2 ANKRD55IL6ST ANKRD55SNX18 ANKRD55

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD55   25681
Cards
Entrez_Gene (NCBI)ANKRD55  79722  ankyrin repeat domain 55
Aliases
GeneCards (Weizmann)ANKRD55
Ensembl hg19 (Hinxton)ENSG00000164512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164512 [Gene_View]  chr5:56099680-56233359 [Contig_View]  ANKRD55 [Vega]
ICGC DataPortalENSG00000164512
TCGA cBioPortalANKRD55
AceView (NCBI)ANKRD55
Genatlas (Paris)ANKRD55
WikiGenes79722
SOURCE (Princeton)ANKRD55
Genetics Home Reference (NIH)ANKRD55
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD55  -     chr5:56099680-56233359 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD55  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblANKRD55 - 5q11.2 [CytoView hg19]  ANKRD55 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIANKRD55 [Mapview hg19]  ANKRD55 [Mapview hg38]
OMIM615189   
Gene and transcription
Genbank (Entrez)AK021857 AK123389 AW269928 BC106914 BC106915
RefSeq transcript (Entrez)NM_001039935 NM_024669
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD55
Cluster EST : UnigeneHs.436214 [ NCBI ]
CGAP (NCI)Hs.436214
Alternative Splicing GalleryENSG00000164512
Gene ExpressionANKRD55 [ NCBI-GEO ]   ANKRD55 [ EBI - ARRAY_EXPRESS ]   ANKRD55 [ SEEK ]   ANKRD55 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79722
GTEX Portal (Tissue expression)ANKRD55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KP44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KP44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KP44
Splice isoforms : SwissVarQ3KP44
PhosPhoSitePlusQ3KP44
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD55
DMDM Disease mutations79722
Blocks (Seattle)ANKRD55
SuperfamilyQ3KP44
Human Protein AtlasENSG00000164512
Peptide AtlasQ3KP44
HPRD07758
IPIIPI00984946   IPI00413655   IPI00973246   IPI00965358   IPI00965635   IPI00002928   IPI00984379   
Protein Interaction databases
DIP (DOE-UCLA)Q3KP44
IntAct (EBI)Q3KP44
FunCoupENSG00000164512
BioGRIDANKRD55
STRING (EMBL)ANKRD55
ZODIACANKRD55
Ontologies - Pathways
QuickGOQ3KP44
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD55
Atlas of Cancer Signalling NetworkANKRD55
Wikipedia pathwaysANKRD55
Orthology - Evolution
OrthoDB79722
GeneTree (enSembl)ENSG00000164512
Phylogenetic Trees/Animal Genes : TreeFamANKRD55
HOVERGENQ3KP44
HOGENOMQ3KP44
Homologs : HomoloGeneANKRD55
Homology/Alignments : Family Browser (UCSC)ANKRD55
Gene fusions - Rearrangements
Fusion: TCGAAKIRIN2 ANKRD55
Fusion: TCGAIL6ST ANKRD55
Fusion: TCGASNX18 ANKRD55
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD55
dbVarANKRD55
ClinVarANKRD55
1000_GenomesANKRD55 
Exome Variant ServerANKRD55
ExAC (Exome Aggregation Consortium)ANKRD55 (select the gene name)
Genetic variants : HAPMAP79722
Genomic Variants (DGV)ANKRD55 [DGVbeta]
DECIPHERANKRD55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD55 
Mutations
ICGC Data PortalANKRD55 
TCGA Data PortalANKRD55 
Broad Tumor PortalANKRD55
OASIS PortalANKRD55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD55
DgiDB (Drug Gene Interaction Database)ANKRD55
DoCM (Curated mutations)ANKRD55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD55 (select a term)
intoGenANKRD55
Cancer3DANKRD55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615189   
Orphanet11710    11709   
MedgenANKRD55
Genetic Testing Registry ANKRD55
NextProtQ3KP44 [Medical]
TSGene79722
GENETestsANKRD55
Target ValidationANKRD55
Huge Navigator ANKRD55 [HugePedia]
snp3D : Map Gene to Disease79722
BioCentury BCIQANKRD55
ClinGenANKRD55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79722
Chemical/Pharm GKB GenePA145149863
Clinical trialANKRD55
Miscellaneous
canSAR (ICR)ANKRD55 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD55
EVEXANKRD55
GoPubMedANKRD55
iHOPANKRD55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:09:20 CEST 2017

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