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ANKRD55 (ankyrin repeat domain 55)

Identity

Alias (NCBI)-
HGNC (Hugo) ANKRD55
HGNC Alias symbFLJ11795
LocusID (NCBI) 79722
Atlas_Id 60360
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56099680 and ends at 56233330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKIRIN2 (6q15)::ANKRD55 (5q11.2)IL6ST (5q11.2)::ANKRD55 (5q11.2)SNX18 (5q11.2)::ANKRD55 (5q11.2)
AKIRIN2 ANKRD55IL6ST ANKRD55SNX18 ANKRD55

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ANKRD55   25681
Cards
Entrez_Gene (NCBI)ANKRD55    ankyrin repeat domain 55
Aliases
GeneCards (Weizmann)ANKRD55
Ensembl hg19 (Hinxton)ENSG00000164512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164512 [Gene_View]  ENSG00000164512 [Sequence]  chr5:56099680-56233330 [Contig_View]  ANKRD55 [Vega]
ICGC DataPortalENSG00000164512
TCGA cBioPortalANKRD55
AceView (NCBI)ANKRD55
Genatlas (Paris)ANKRD55
SOURCE (Princeton)ANKRD55
Genetics Home Reference (NIH)ANKRD55
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD55  -     chr5:56099680-56233330 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD55  -     5q11.2   [Description]    (hg19-Feb_2009)
GoldenPathANKRD55 - 5q11.2 [CytoView hg19]  ANKRD55 - 5q11.2 [CytoView hg38]
ImmunoBaseENSG00000164512
Genome Data Viewer NCBIANKRD55 [Mapview hg19]  
OMIM615189   
Gene and transcription
Genbank (Entrez)AK021857 AK123389 AW269928 BC106914 BC106915
RefSeq transcript (Entrez)NM_001039935 NM_024669
Consensus coding sequences : CCDS (NCBI)ANKRD55
Gene ExpressionANKRD55 [ NCBI-GEO ]   ANKRD55 [ EBI - ARRAY_EXPRESS ]   ANKRD55 [ SEEK ]   ANKRD55 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD55 [ Firebrowse - Broad ]
GenevisibleExpression of ANKRD55 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79722
GTEX Portal (Tissue expression)ANKRD55
Human Protein AtlasENSG00000164512-ANKRD55 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KP44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KP44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KP44
PhosPhoSitePlusQ3KP44
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD55
SuperfamilyQ3KP44
AlphaFold pdb e-kbQ3KP44   
Human Protein Atlas [tissue]ENSG00000164512-ANKRD55 [tissue]
HPRD07758
Protein Interaction databases
DIP (DOE-UCLA)Q3KP44
IntAct (EBI)Q3KP44
BioGRIDANKRD55
STRING (EMBL)ANKRD55
ZODIACANKRD55
Ontologies - Pathways
QuickGOQ3KP44
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkANKRD55
Atlas of Cancer Signalling NetworkANKRD55
Wikipedia pathwaysANKRD55
Orthology - Evolution
OrthoDB79722
GeneTree (enSembl)ENSG00000164512
Phylogenetic Trees/Animal Genes : TreeFamANKRD55
Homologs : HomoloGeneANKRD55
Homology/Alignments : Family Browser (UCSC)ANKRD55
Gene fusions - Rearrangements
Fusion : QuiverANKRD55
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD55
dbVarANKRD55
ClinVarANKRD55
MonarchANKRD55
1000_GenomesANKRD55 
Exome Variant ServerANKRD55
GNOMAD BrowserENSG00000164512
Varsome BrowserANKRD55
ACMGANKRD55 variants
VarityQ3KP44
Genomic Variants (DGV)ANKRD55 [DGVbeta]
DECIPHERANKRD55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD55 
Mutations
ICGC Data PortalANKRD55 
TCGA Data PortalANKRD55 
Broad Tumor PortalANKRD55
OASIS PortalANKRD55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD55  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DANKRD55
Mutations and Diseases : HGMDANKRD55
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaANKRD55
DgiDB (Drug Gene Interaction Database)ANKRD55
DoCM (Curated mutations)ANKRD55
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD55
Cancer3DANKRD55
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615189   
Orphanet11710    11709   
DisGeNETANKRD55
MedgenANKRD55
Genetic Testing Registry ANKRD55
NextProtQ3KP44 [Medical]
GENETestsANKRD55
Target ValidationANKRD55
Huge Navigator ANKRD55 [HugePedia]
ClinGenANKRD55
Clinical trials, drugs, therapy
MyCancerGenomeANKRD55
Protein Interactions : CTDANKRD55
Pharm GKB GenePA145149863
PharosQ3KP44
Clinical trialANKRD55
Miscellaneous
canSAR (ICR)ANKRD55
HarmonizomeANKRD55
ARCHS4ANKRD55
DataMed IndexANKRD55
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXANKRD55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:44:42 CET 2022

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