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ANKRD60 (ankyrin repeat domain 60)

Identity

Alias_namesC20orf86
chromosome 20 open reading frame 86
Alias_symbol (synonym)bA196N14.3
Other alias
HGNC (Hugo) ANKRD60
LocusID (NCBI) 140731
Atlas_Id 77622
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58216126 and ends at 58228653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD60   16217
Cards
Entrez_Gene (NCBI)ANKRD60  140731  ankyrin repeat domain 60
AliasesC20orf86; bA196N14.3
GeneCards (Weizmann)ANKRD60
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:58216126-58228653 [Contig_View]  ANKRD60 [Vega]
TCGA cBioPortalANKRD60
AceView (NCBI)ANKRD60
Genatlas (Paris)ANKRD60
WikiGenes140731
SOURCE (Princeton)ANKRD60
Genetics Home Reference (NIH)ANKRD60
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD60  -     chr20:58216126-58228653 -  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD60  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblANKRD60 - 20q13.32 [CytoView hg19]  ANKRD60 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIANKRD60 [Mapview hg19]  ANKRD60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW629215
RefSeq transcript (Entrez)NM_001304369 NM_080674
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD60
Cluster EST : UnigeneHs.266571 [ NCBI ]
CGAP (NCI)Hs.266571
Gene ExpressionANKRD60 [ NCBI-GEO ]   ANKRD60 [ EBI - ARRAY_EXPRESS ]   ANKRD60 [ SEEK ]   ANKRD60 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140731
GTEX Portal (Tissue expression)ANKRD60
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ19
Splice isoforms : SwissVarQ9BZ19
PhosPhoSitePlusQ9BZ19
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD60
DMDM Disease mutations140731
Blocks (Seattle)ANKRD60
SuperfamilyQ9BZ19
Peptide AtlasQ9BZ19
HPRD12788
IPIIPI00011781   IPI01026101   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ19
IntAct (EBI)Q9BZ19
BioGRIDANKRD60
STRING (EMBL)ANKRD60
ZODIACANKRD60
Ontologies - Pathways
QuickGOQ9BZ19
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD60
Atlas of Cancer Signalling NetworkANKRD60
Wikipedia pathwaysANKRD60
Orthology - Evolution
OrthoDB140731
Phylogenetic Trees/Animal Genes : TreeFamANKRD60
HOVERGENQ9BZ19
HOGENOMQ9BZ19
Homologs : HomoloGeneANKRD60
Homology/Alignments : Family Browser (UCSC)ANKRD60
Gene fusions - Rearrangements
Fusion: Tumor Portal ANKRD60
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD60
dbVarANKRD60
ClinVarANKRD60
1000_GenomesANKRD60 
Exome Variant ServerANKRD60
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP140731
Genomic Variants (DGV)ANKRD60 [DGVbeta]
DECIPHERANKRD60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD60 
Mutations
ICGC Data PortalANKRD60 
TCGA Data PortalANKRD60 
Broad Tumor PortalANKRD60
OASIS PortalANKRD60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD60
DgiDB (Drug Gene Interaction Database)ANKRD60
DoCM (Curated mutations)ANKRD60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD60 (select a term)
intoGenANKRD60
Cancer3DANKRD60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD60
Genetic Testing Registry ANKRD60
NextProtQ9BZ19 [Medical]
TSGene140731
GENETestsANKRD60
Target ValidationANKRD60
Huge Navigator ANKRD60 [HugePedia]
snp3D : Map Gene to Disease140731
BioCentury BCIQANKRD60
ClinGenANKRD60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140731
Chemical/Pharm GKB GenePA162376674
Clinical trialANKRD60
Miscellaneous
canSAR (ICR)ANKRD60 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD60
EVEXANKRD60
GoPubMedANKRD60
iHOPANKRD60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:50 CET 2017

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