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ANKRD62 (ankyrin repeat domain 62)

Identity

Alias_symbol (synonym)DKFZp779B1634
Other alias
HGNC (Hugo) ANKRD62
LocusID (NCBI) 342850
Atlas_Id 60363
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12093848 and ends at 12129748 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD62   35241
Cards
Entrez_Gene (NCBI)ANKRD62  342850  ankyrin repeat domain 62
AliasesDKFZp779B1634
GeneCards (Weizmann)ANKRD62
Ensembl hg19 (Hinxton) [Gene_View]  chr18:12093848-12129748 [Contig_View]  ANKRD62 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:12093848-12129748 [Contig_View]  ANKRD62 [Vega]
TCGA cBioPortalANKRD62
AceView (NCBI)ANKRD62
Genatlas (Paris)ANKRD62
WikiGenes342850
SOURCE (Princeton)ANKRD62
Genetics Home Reference (NIH)ANKRD62
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD62  -     chr18:12093848-12129748 +  18p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD62  -     18p11.21   [Description]    (hg38-Dec_2013)
EnsemblANKRD62 - 18p11.21 [CytoView hg19]  ANKRD62 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIANKRD62 [Mapview hg19]  ANKRD62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX648696 BX649021 DW010010 DW010011 EG328348
RefSeq transcript (Entrez)NM_001277333
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)ANKRD62
Cluster EST : UnigeneHs.448906 [ NCBI ]
CGAP (NCI)Hs.448906
Gene ExpressionANKRD62 [ NCBI-GEO ]   ANKRD62 [ EBI - ARRAY_EXPRESS ]   ANKRD62 [ SEEK ]   ANKRD62 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342850
GTEX Portal (Tissue expression)ANKRD62
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC57
Splice isoforms : SwissVarA6NC57
PhosPhoSitePlusA6NC57
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD62
DMDM Disease mutations342850
Blocks (Seattle)ANKRD62
SuperfamilyA6NC57
Peptide AtlasA6NC57
IPIIPI00247110   IPI00888032   IPI00969481   IPI00976730   
Protein Interaction databases
DIP (DOE-UCLA)A6NC57
IntAct (EBI)A6NC57
BioGRIDANKRD62
STRING (EMBL)ANKRD62
ZODIACANKRD62
Ontologies - Pathways
QuickGOA6NC57
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD62
Atlas of Cancer Signalling NetworkANKRD62
Wikipedia pathwaysANKRD62
Orthology - Evolution
OrthoDB342850
Phylogenetic Trees/Animal Genes : TreeFamANKRD62
HOVERGENA6NC57
HOGENOMA6NC57
Homologs : HomoloGeneANKRD62
Homology/Alignments : Family Browser (UCSC)ANKRD62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD62
dbVarANKRD62
ClinVarANKRD62
1000_GenomesANKRD62 
Exome Variant ServerANKRD62
ExAC (Exome Aggregation Consortium)ANKRD62 (select the gene name)
Genetic variants : HAPMAP342850
Genomic Variants (DGV)ANKRD62 [DGVbeta]
DECIPHER (Syndromes)18:12093848-12129748  
CONAN: Copy Number AnalysisANKRD62 
Mutations
ICGC Data PortalANKRD62 
TCGA Data PortalANKRD62 
Broad Tumor PortalANKRD62
OASIS PortalANKRD62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD62
DgiDB (Drug Gene Interaction Database)ANKRD62
DoCM (Curated mutations)ANKRD62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD62 (select a term)
intoGenANKRD62
Cancer3DANKRD62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD62
Genetic Testing Registry ANKRD62
NextProtA6NC57 [Medical]
TSGene342850
GENETestsANKRD62
Huge Navigator ANKRD62 [HugePedia]
snp3D : Map Gene to Disease342850
BioCentury BCIQANKRD62
ClinGenANKRD62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342850
Chemical/Pharm GKB GenePA164715347
Clinical trialANKRD62
Miscellaneous
canSAR (ICR)ANKRD62 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD62
EVEXANKRD62
GoPubMedANKRD62
iHOPANKRD62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:54:29 CET 2017

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