Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANKRD65 (ankyrin repeat domain 65)

Identity

Other alias-
HGNC (Hugo) ANKRD65
LocusID (NCBI) 441869
Atlas_Id 60366
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1418420 and ends at 1421444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DRAP1 (11q13.1) / ANKRD65 (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD65   42950
Cards
Entrez_Gene (NCBI)ANKRD65  441869  ankyrin repeat domain 65
Aliases
GeneCards (Weizmann)ANKRD65
Ensembl hg19 (Hinxton)ENSG00000235098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235098 [Gene_View]  chr1:1418420-1421444 [Contig_View]  ANKRD65 [Vega]
ICGC DataPortalENSG00000235098
TCGA cBioPortalANKRD65
AceView (NCBI)ANKRD65
Genatlas (Paris)ANKRD65
WikiGenes441869
SOURCE (Princeton)ANKRD65
Genetics Home Reference (NIH)ANKRD65
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD65  -     chr1:1418420-1421444 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD65  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblANKRD65 - 1p36.33 [CytoView hg19]  ANKRD65 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIANKRD65 [Mapview hg19]  ANKRD65 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI094806 AI522076 BC018095 BC063445 BC073150
RefSeq transcript (Entrez)NM_001145210 NM_001243535 NM_001243536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD65
Cluster EST : UnigeneHs.381222 [ NCBI ]
CGAP (NCI)Hs.381222
Alternative Splicing GalleryENSG00000235098
Gene ExpressionANKRD65 [ NCBI-GEO ]   ANKRD65 [ EBI - ARRAY_EXPRESS ]   ANKRD65 [ SEEK ]   ANKRD65 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441869
GTEX Portal (Tissue expression)ANKRD65
Protein : pattern, domain, 3D structure
UniProt/SwissProtE5RJM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE5RJM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE5RJM6
Splice isoforms : SwissVarE5RJM6
PhosPhoSitePlusE5RJM6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD65
DMDM Disease mutations441869
Blocks (Seattle)ANKRD65
SuperfamilyE5RJM6
Human Protein AtlasENSG00000235098
Peptide AtlasE5RJM6
IPIIPI00922480   IPI00883632   IPI00979173   
Protein Interaction databases
DIP (DOE-UCLA)E5RJM6
IntAct (EBI)E5RJM6
FunCoupENSG00000235098
BioGRIDANKRD65
STRING (EMBL)ANKRD65
ZODIACANKRD65
Ontologies - Pathways
QuickGOE5RJM6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD65
Atlas of Cancer Signalling NetworkANKRD65
Wikipedia pathwaysANKRD65
Orthology - Evolution
OrthoDB441869
GeneTree (enSembl)ENSG00000235098
Phylogenetic Trees/Animal Genes : TreeFamANKRD65
HOVERGENE5RJM6
HOGENOME5RJM6
Homologs : HomoloGeneANKRD65
Homology/Alignments : Family Browser (UCSC)ANKRD65
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD65
dbVarANKRD65
ClinVarANKRD65
1000_GenomesANKRD65 
Exome Variant ServerANKRD65
ExAC (Exome Aggregation Consortium)ANKRD65 (select the gene name)
Genetic variants : HAPMAP441869
Genomic Variants (DGV)ANKRD65 [DGVbeta]
DECIPHERANKRD65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD65 
Mutations
ICGC Data PortalANKRD65 
TCGA Data PortalANKRD65 
Broad Tumor PortalANKRD65
OASIS PortalANKRD65 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD65  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD65
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD65
DgiDB (Drug Gene Interaction Database)ANKRD65
DoCM (Curated mutations)ANKRD65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD65 (select a term)
intoGenANKRD65
Cancer3DANKRD65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD65
Genetic Testing Registry ANKRD65
NextProtE5RJM6 [Medical]
TSGene441869
GENETestsANKRD65
Target ValidationANKRD65
Huge Navigator ANKRD65 [HugePedia]
snp3D : Map Gene to Disease441869
BioCentury BCIQANKRD65
ClinGenANKRD65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441869
Chemical/Pharm GKB GenePA166049086
Clinical trialANKRD65
Miscellaneous
canSAR (ICR)ANKRD65 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD65
EVEXANKRD65
GoPubMedANKRD65
iHOPANKRD65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:38:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.