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ANKRD7 (ankyrin repeat domain 7)

Identity

Alias_symbol (synonym)TSA806
Other alias
HGNC (Hugo) ANKRD7
LocusID (NCBI) 56311
Atlas_Id 54127
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 117864712 and ends at 117882784 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD7 (7q31.31) / DUS4L (7q22.3)DUS4L (7q22.3) / ANKRD7 (7q31.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ANKRD7   18588
Cards
Entrez_Gene (NCBI)ANKRD7  56311  ankyrin repeat domain 7
AliasesTSA806
GeneCards (Weizmann)ANKRD7
Ensembl hg19 (Hinxton)ENSG00000106013 [Gene_View]  chr7:117864712-117882784 [Contig_View]  ANKRD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106013 [Gene_View]  chr7:117864712-117882784 [Contig_View]  ANKRD7 [Vega]
ICGC DataPortalENSG00000106013
TCGA cBioPortalANKRD7
AceView (NCBI)ANKRD7
Genatlas (Paris)ANKRD7
WikiGenes56311
SOURCE (Princeton)ANKRD7
Genetics Home Reference (NIH)ANKRD7
Genomic and cartography
GoldenPath hg19 (UCSC)ANKRD7  -     chr7:117864712-117882784 +  7q31.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKRD7  -     7q31.31   [Description]    (hg38-Dec_2013)
EnsemblANKRD7 - 7q31.31 [CytoView hg19]  ANKRD7 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBIANKRD7 [Mapview hg19]  ANKRD7 [Mapview hg38]
OMIM610731   
Gene and transcription
Genbank (Entrez)AA435914 AI126287 AI149744 AK302407 BC007020
RefSeq transcript (Entrez)NM_001077708 NM_019644
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ANKRD7
Cluster EST : UnigeneHs.729340 [ NCBI ]
CGAP (NCI)Hs.729340
Alternative Splicing GalleryENSG00000106013
Gene ExpressionANKRD7 [ NCBI-GEO ]   ANKRD7 [ EBI - ARRAY_EXPRESS ]   ANKRD7 [ SEEK ]   ANKRD7 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56311
GTEX Portal (Tissue expression)ANKRD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92527   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92527  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92527
Splice isoforms : SwissVarQ92527
PhosPhoSitePlusQ92527
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKRD7
DMDM Disease mutations56311
Blocks (Seattle)ANKRD7
SuperfamilyQ92527
Human Protein AtlasENSG00000106013
Peptide AtlasQ92527
IPIIPI00926356   IPI00816206   IPI00925956   IPI00945582   
Protein Interaction databases
DIP (DOE-UCLA)Q92527
IntAct (EBI)Q92527
FunCoupENSG00000106013
BioGRIDANKRD7
STRING (EMBL)ANKRD7
ZODIACANKRD7
Ontologies - Pathways
QuickGOQ92527
Ontology : AmiGOmale gonad development  
Ontology : EGO-EBImale gonad development  
NDEx NetworkANKRD7
Atlas of Cancer Signalling NetworkANKRD7
Wikipedia pathwaysANKRD7
Orthology - Evolution
OrthoDB56311
GeneTree (enSembl)ENSG00000106013
Phylogenetic Trees/Animal Genes : TreeFamANKRD7
HOVERGENQ92527
HOGENOMQ92527
Homologs : HomoloGeneANKRD7
Homology/Alignments : Family Browser (UCSC)ANKRD7
Gene fusions - Rearrangements
Fusion : MitelmanANKRD7/DUS4L [7q31.31/7q22.3]  
Fusion : MitelmanDUS4L/ANKRD7 [7q22.3/7q31.31]  [t(7;7)(q22;q31)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD7
dbVarANKRD7
ClinVarANKRD7
1000_GenomesANKRD7 
Exome Variant ServerANKRD7
ExAC (Exome Aggregation Consortium)ANKRD7 (select the gene name)
Genetic variants : HAPMAP56311
Genomic Variants (DGV)ANKRD7 [DGVbeta]
DECIPHER (Syndromes)7:117864712-117882784  ENSG00000106013
CONAN: Copy Number AnalysisANKRD7 
Mutations
ICGC Data PortalANKRD7 
TCGA Data PortalANKRD7 
Broad Tumor PortalANKRD7
OASIS PortalANKRD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD7
DgiDB (Drug Gene Interaction Database)ANKRD7
DoCM (Curated mutations)ANKRD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD7 (select a term)
intoGenANKRD7
Cancer3DANKRD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610731   
Orphanet
MedgenANKRD7
Genetic Testing Registry ANKRD7
NextProtQ92527 [Medical]
TSGene56311
GENETestsANKRD7
Huge Navigator ANKRD7 [HugePedia]
snp3D : Map Gene to Disease56311
BioCentury BCIQANKRD7
ClinGenANKRD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56311
Chemical/Pharm GKB GenePA38591
Clinical trialANKRD7
Miscellaneous
canSAR (ICR)ANKRD7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD7
EVEXANKRD7
GoPubMedANKRD7
iHOPANKRD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:53 CET 2017

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