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ANKRD9 (ankyrin repeat domain 9)

Identity

Other alias-
HGNC (Hugo) ANKRD9
LocusID (NCBI) 122416
Atlas_Id 60368
Location 14q32.31  [Link to chromosome band 14q32]
Location_base_pair Starts at 102503649 and ends at 102509806 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKRD9   20096
Cards
Entrez_Gene (NCBI)ANKRD9  122416  ankyrin repeat domain 9
Aliases
GeneCards (Weizmann)ANKRD9
Ensembl hg19 (Hinxton)ENSG00000156381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156381 [Gene_View]  chr14:102503649-102509806 [Contig_View]  ANKRD9 [Vega]
ICGC DataPortalENSG00000156381
TCGA cBioPortalANKRD9
AceView (NCBI)ANKRD9
Genatlas (Paris)ANKRD9
WikiGenes122416
SOURCE (Princeton)ANKRD9
Genetics Home Reference (NIH)ANKRD9
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD9  -     chr14:102503649-102509806 -  14q32.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD9  -     14q32.31   [Description]    (hg19-Feb_2009)
EnsemblANKRD9 - 14q32.31 [CytoView hg19]  ANKRD9 - 14q32.31 [CytoView hg38]
Mapping of homologs : NCBIANKRD9 [Mapview hg19]  ANKRD9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291868 AW138815 BC015422 BC027479 BX161460
RefSeq transcript (Entrez)NM_001348651 NM_001348652 NM_152326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD9
Cluster EST : UnigeneHs.586830 [ NCBI ]
CGAP (NCI)Hs.586830
Alternative Splicing GalleryENSG00000156381
Gene ExpressionANKRD9 [ NCBI-GEO ]   ANKRD9 [ EBI - ARRAY_EXPRESS ]   ANKRD9 [ SEEK ]   ANKRD9 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122416
GTEX Portal (Tissue expression)ANKRD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BM1
Splice isoforms : SwissVarQ96BM1
PhosPhoSitePlusQ96BM1
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ANKRD9
DMDM Disease mutations122416
Blocks (Seattle)ANKRD9
SuperfamilyQ96BM1
Human Protein AtlasENSG00000156381
Peptide AtlasQ96BM1
HPRD12467
IPIIPI00073421   
Protein Interaction databases
DIP (DOE-UCLA)Q96BM1
IntAct (EBI)Q96BM1
FunCoupENSG00000156381
BioGRIDANKRD9
STRING (EMBL)ANKRD9
ZODIACANKRD9
Ontologies - Pathways
QuickGOQ96BM1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD9
Atlas of Cancer Signalling NetworkANKRD9
Wikipedia pathwaysANKRD9
Orthology - Evolution
OrthoDB122416
GeneTree (enSembl)ENSG00000156381
Phylogenetic Trees/Animal Genes : TreeFamANKRD9
HOVERGENQ96BM1
HOGENOMQ96BM1
Homologs : HomoloGeneANKRD9
Homology/Alignments : Family Browser (UCSC)ANKRD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD9
dbVarANKRD9
ClinVarANKRD9
1000_GenomesANKRD9 
Exome Variant ServerANKRD9
ExAC (Exome Aggregation Consortium)ANKRD9 (select the gene name)
Genetic variants : HAPMAP122416
Genomic Variants (DGV)ANKRD9 [DGVbeta]
DECIPHERANKRD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD9 
Mutations
ICGC Data PortalANKRD9 
TCGA Data PortalANKRD9 
Broad Tumor PortalANKRD9
OASIS PortalANKRD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKRD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKRD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKRD9
DgiDB (Drug Gene Interaction Database)ANKRD9
DoCM (Curated mutations)ANKRD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD9 (select a term)
intoGenANKRD9
Cancer3DANKRD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKRD9
Genetic Testing Registry ANKRD9
NextProtQ96BM1 [Medical]
TSGene122416
GENETestsANKRD9
Target ValidationANKRD9
Huge Navigator ANKRD9 [HugePedia]
snp3D : Map Gene to Disease122416
BioCentury BCIQANKRD9
ClinGenANKRD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122416
Chemical/Pharm GKB GenePA134971966
Clinical trialANKRD9
Miscellaneous
canSAR (ICR)ANKRD9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD9
EVEXANKRD9
GoPubMedANKRD9
iHOPANKRD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:01:27 CEST 2017

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