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ANKS3 (ankyrin repeat and sterile alpha motif domain containing 3)

Identity

Alias_symbol (synonym)KIAA1977
FLJ32345
FLJ32767
Other alias-
HGNC (Hugo) ANKS3
LocusID (NCBI) 124401
Atlas_Id 60370
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4696510 and ends at 4734377 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKS3   29422
Cards
Entrez_Gene (NCBI)ANKS3  124401  ankyrin repeat and sterile alpha motif domain containing 3
Aliases
GeneCards (Weizmann)ANKS3
Ensembl hg19 (Hinxton)ENSG00000168096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168096 [Gene_View]  chr16:4696510-4734377 [Contig_View]  ANKS3 [Vega]
ICGC DataPortalENSG00000168096
TCGA cBioPortalANKS3
AceView (NCBI)ANKS3
Genatlas (Paris)ANKS3
WikiGenes124401
SOURCE (Princeton)ANKS3
Genetics Home Reference (NIH)ANKS3
Genomic and cartography
GoldenPath hg38 (UCSC)ANKS3  -     chr16:4696510-4734377 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKS3  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblANKS3 - 16p13.3 [CytoView hg19]  ANKS3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIANKS3 [Mapview hg19]  ANKS3 [Mapview hg38]
OMIM617310   
Gene and transcription
Genbank (Entrez)AB075857 AI560632 AK056907 AK057329 AK123371
RefSeq transcript (Entrez)NM_001242929 NM_001308089 NM_001324129 NM_001324130 NM_133450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKS3
Cluster EST : UnigeneHs.654859 [ NCBI ]
CGAP (NCI)Hs.654859
Alternative Splicing GalleryENSG00000168096
Gene ExpressionANKS3 [ NCBI-GEO ]   ANKS3 [ EBI - ARRAY_EXPRESS ]   ANKS3 [ SEEK ]   ANKS3 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124401
GTEX Portal (Tissue expression)ANKS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZW76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZW76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZW76
Splice isoforms : SwissVarQ6ZW76
PhosPhoSitePlusQ6ZW76
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SAM    SAM/pointed   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam12796    pfam00536   
Domain families : Smart (EMBL)ANK (SM00248)  SAM (SM00454)  
Conserved Domain (NCBI)ANKS3
DMDM Disease mutations124401
Blocks (Seattle)ANKS3
PDB (SRS)4NJ8    4NL9   
PDB (PDBSum)4NJ8    4NL9   
PDB (IMB)4NJ8    4NL9   
PDB (RSDB)4NJ8    4NL9   
Structural Biology KnowledgeBase4NJ8    4NL9   
SCOP (Structural Classification of Proteins)4NJ8    4NL9   
CATH (Classification of proteins structures)4NJ8    4NL9   
SuperfamilyQ6ZW76
Human Protein AtlasENSG00000168096
Peptide AtlasQ6ZW76
HPRD13909
IPIIPI00401758   IPI00645601   IPI00645063   IPI00642972   IPI00446670   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZW76
IntAct (EBI)Q6ZW76
FunCoupENSG00000168096
BioGRIDANKS3
STRING (EMBL)ANKS3
ZODIACANKS3
Ontologies - Pathways
QuickGOQ6ZW76
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkANKS3
Atlas of Cancer Signalling NetworkANKS3
Wikipedia pathwaysANKS3
Orthology - Evolution
OrthoDB124401
GeneTree (enSembl)ENSG00000168096
Phylogenetic Trees/Animal Genes : TreeFamANKS3
HOVERGENQ6ZW76
HOGENOMQ6ZW76
Homologs : HomoloGeneANKS3
Homology/Alignments : Family Browser (UCSC)ANKS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKS3
dbVarANKS3
ClinVarANKS3
1000_GenomesANKS3 
Exome Variant ServerANKS3
ExAC (Exome Aggregation Consortium)ANKS3 (select the gene name)
Genetic variants : HAPMAP124401
Genomic Variants (DGV)ANKS3 [DGVbeta]
DECIPHERANKS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKS3 
Mutations
ICGC Data PortalANKS3 
TCGA Data PortalANKS3 
Broad Tumor PortalANKS3
OASIS PortalANKS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKS3
DgiDB (Drug Gene Interaction Database)ANKS3
DoCM (Curated mutations)ANKS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKS3 (select a term)
intoGenANKS3
Cancer3DANKS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617310   
Orphanet
MedgenANKS3
Genetic Testing Registry ANKS3
NextProtQ6ZW76 [Medical]
TSGene124401
GENETestsANKS3
Target ValidationANKS3
Huge Navigator ANKS3 [HugePedia]
snp3D : Map Gene to Disease124401
BioCentury BCIQANKS3
ClinGenANKS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124401
Chemical/Pharm GKB GenePA143485303
Clinical trialANKS3
Miscellaneous
canSAR (ICR)ANKS3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKS3
EVEXANKS3
GoPubMedANKS3
iHOPANKS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:20 CEST 2017

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