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ANKS4B (ankyrin repeat and sterile alpha motif domain containing 4B)

Identity

Alias_symbol (synonym)FLJ38819
HARP
Other alias
HGNC (Hugo) ANKS4B
LocusID (NCBI) 257629
Atlas_Id 60371
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21233695 and ends at 21252429 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKS4B   26795
Cards
Entrez_Gene (NCBI)ANKS4B  257629  ankyrin repeat and sterile alpha motif domain containing 4B
AliasesHARP
GeneCards (Weizmann)ANKS4B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21233695-21252429 [Contig_View]  ANKS4B [Vega]
TCGA cBioPortalANKS4B
AceView (NCBI)ANKS4B
Genatlas (Paris)ANKS4B
WikiGenes257629
SOURCE (Princeton)ANKS4B
Genetics Home Reference (NIH)ANKS4B
Genomic and cartography
GoldenPath hg38 (UCSC)ANKS4B  -     chr16:21233695-21252429 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKS4B  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblANKS4B - 16p12.2 [CytoView hg19]  ANKS4B - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIANKS4B [Mapview hg19]  ANKS4B [Mapview hg38]
OMIM609901   
Gene and transcription
Genbank (Entrez)AK096138 BC111784 BC112368 BC160087
RefSeq transcript (Entrez)NM_145865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKS4B
Cluster EST : UnigeneHs.115959 [ NCBI ]
CGAP (NCI)Hs.115959
Gene ExpressionANKS4B [ NCBI-GEO ]   ANKS4B [ EBI - ARRAY_EXPRESS ]   ANKS4B [ SEEK ]   ANKS4B [ MEM ]
Gene Expression Viewer (FireBrowse)ANKS4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257629
GTEX Portal (Tissue expression)ANKS4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8V4
Splice isoforms : SwissVarQ8N8V4
PhosPhoSitePlusQ8N8V4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SAM    SAM/pointed   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam12796    pfam00536   
Domain families : Smart (EMBL)ANK (SM00248)  SAM (SM00454)  
Conserved Domain (NCBI)ANKS4B
DMDM Disease mutations257629
Blocks (Seattle)ANKS4B
SuperfamilyQ8N8V4
Peptide AtlasQ8N8V4
HPRD08794
IPIIPI00167598   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8V4
IntAct (EBI)Q8N8V4
BioGRIDANKS4B
STRING (EMBL)ANKS4B
ZODIACANKS4B
Ontologies - Pathways
QuickGOQ8N8V4
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  plasma membrane  microvillus  brush border  cell differentiation  response to endoplasmic reticulum stress  cellular protein complex assembly  protein localization to microvillus  brush border assembly  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  plasma membrane  microvillus  brush border  cell differentiation  response to endoplasmic reticulum stress  cellular protein complex assembly  protein localization to microvillus  brush border assembly  
NDEx NetworkANKS4B
Atlas of Cancer Signalling NetworkANKS4B
Wikipedia pathwaysANKS4B
Orthology - Evolution
OrthoDB257629
Phylogenetic Trees/Animal Genes : TreeFamANKS4B
HOVERGENQ8N8V4
HOGENOMQ8N8V4
Homologs : HomoloGeneANKS4B
Homology/Alignments : Family Browser (UCSC)ANKS4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKS4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKS4B
dbVarANKS4B
ClinVarANKS4B
1000_GenomesANKS4B 
Exome Variant ServerANKS4B
ExAC (Exome Aggregation Consortium)ANKS4B (select the gene name)
Genetic variants : HAPMAP257629
Genomic Variants (DGV)ANKS4B [DGVbeta]
DECIPHERANKS4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKS4B 
Mutations
ICGC Data PortalANKS4B 
TCGA Data PortalANKS4B 
Broad Tumor PortalANKS4B
OASIS PortalANKS4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKS4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKS4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKS4B
DgiDB (Drug Gene Interaction Database)ANKS4B
DoCM (Curated mutations)ANKS4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKS4B (select a term)
intoGenANKS4B
Cancer3DANKS4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609901   
Orphanet
MedgenANKS4B
Genetic Testing Registry ANKS4B
NextProtQ8N8V4 [Medical]
TSGene257629
GENETestsANKS4B
Target ValidationANKS4B
Huge Navigator ANKS4B [HugePedia]
snp3D : Map Gene to Disease257629
BioCentury BCIQANKS4B
ClinGenANKS4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257629
Chemical/Pharm GKB GenePA143485304
Clinical trialANKS4B
Miscellaneous
canSAR (ICR)ANKS4B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKS4B
EVEXANKS4B
GoPubMedANKS4B
iHOPANKS4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:27 CEST 2017

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