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ANKS6 (ankyrin repeat and sterile alpha motif domain containing 6)

Identity

Alias_namesSAMD6
ANKRD14
sterile alpha motif domain containing 6
ankyrin repeat domain 14
Alias_symbol (synonym)FLJ36928
NPHP16
Other aliasPKDR1
HGNC (Hugo) ANKS6
LocusID (NCBI) 203286
Atlas_Id 60372
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 101494291 and ends at 101558794 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKS6 (9q22.33) / SEC62 (3q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKS6   26724
Cards
Entrez_Gene (NCBI)ANKS6  203286  ankyrin repeat and sterile alpha motif domain containing 6
AliasesANKRD14; NPHP16; PKDR1; SAMD6
GeneCards (Weizmann)ANKS6
Ensembl hg19 (Hinxton)ENSG00000165138 [Gene_View]  chr9:101494291-101558794 [Contig_View]  ANKS6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165138 [Gene_View]  chr9:101494291-101558794 [Contig_View]  ANKS6 [Vega]
ICGC DataPortalENSG00000165138
TCGA cBioPortalANKS6
AceView (NCBI)ANKS6
Genatlas (Paris)ANKS6
WikiGenes203286
SOURCE (Princeton)ANKS6
Genetics Home Reference (NIH)ANKS6
Genomic and cartography
GoldenPath hg19 (UCSC)ANKS6  -     chr9:101494291-101558794 -  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANKS6  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblANKS6 - 9q22.33 [CytoView hg19]  ANKS6 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIANKS6 [Mapview hg19]  ANKS6 [Mapview hg38]
OMIM615370   615382   
Gene and transcription
Genbank (Entrez)AK074328 AK094247 AK126614 AK127702 BC012981
RefSeq transcript (Entrez)NM_173551
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ANKS6
Cluster EST : UnigeneHs.406890 [ NCBI ]
CGAP (NCI)Hs.406890
Alternative Splicing GalleryENSG00000165138
Gene ExpressionANKS6 [ NCBI-GEO ]   ANKS6 [ EBI - ARRAY_EXPRESS ]   ANKS6 [ SEEK ]   ANKS6 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKS6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203286
GTEX Portal (Tissue expression)ANKS6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DC2
Splice isoforms : SwissVarQ68DC2
PhosPhoSitePlusQ68DC2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SAM    SAM/pointed    SAM_type1   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam12796    pfam00536   
Domain families : Smart (EMBL)ANK (SM00248)  SAM (SM00454)  
Conserved Domain (NCBI)ANKS6
DMDM Disease mutations203286
Blocks (Seattle)ANKS6
PDB (SRS)4NL9   
PDB (PDBSum)4NL9   
PDB (IMB)4NL9   
PDB (RSDB)4NL9   
Structural Biology KnowledgeBase4NL9   
SCOP (Structural Classification of Proteins)4NL9   
CATH (Classification of proteins structures)4NL9   
SuperfamilyQ68DC2
Human Protein AtlasENSG00000165138
Peptide AtlasQ68DC2
HPRD18012
IPIIPI00418361   IPI00478175   IPI00655743   IPI00935699   
Protein Interaction databases
DIP (DOE-UCLA)Q68DC2
IntAct (EBI)Q68DC2
FunCoupENSG00000165138
BioGRIDANKS6
STRING (EMBL)ANKS6
ZODIACANKS6
Ontologies - Pathways
QuickGOQ68DC2
Ontology : AmiGOcytoplasm  cilium  protein homodimerization activity  
Ontology : EGO-EBIcytoplasm  cilium  protein homodimerization activity  
NDEx NetworkANKS6
Atlas of Cancer Signalling NetworkANKS6
Wikipedia pathwaysANKS6
Orthology - Evolution
OrthoDB203286
GeneTree (enSembl)ENSG00000165138
Phylogenetic Trees/Animal Genes : TreeFamANKS6
HOVERGENQ68DC2
HOGENOMQ68DC2
Homologs : HomoloGeneANKS6
Homology/Alignments : Family Browser (UCSC)ANKS6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKS6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKS6
dbVarANKS6
ClinVarANKS6
1000_GenomesANKS6 
Exome Variant ServerANKS6
ExAC (Exome Aggregation Consortium)ANKS6 (select the gene name)
Genetic variants : HAPMAP203286
Genomic Variants (DGV)ANKS6 [DGVbeta]
DECIPHER (Syndromes)9:101494291-101558794  ENSG00000165138
CONAN: Copy Number AnalysisANKS6 
Mutations
ICGC Data PortalANKS6 
TCGA Data PortalANKS6 
Broad Tumor PortalANKS6
OASIS PortalANKS6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKS6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKS6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKS6
DgiDB (Drug Gene Interaction Database)ANKS6
DoCM (Curated mutations)ANKS6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKS6 (select a term)
intoGenANKS6
Cancer3DANKS6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615370    615382   
Orphanet12426    12427   
MedgenANKS6
Genetic Testing Registry ANKS6
NextProtQ68DC2 [Medical]
TSGene203286
GENETestsANKS6
Huge Navigator ANKS6 [HugePedia]
snp3D : Map Gene to Disease203286
BioCentury BCIQANKS6
ClinGenANKS6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203286
Chemical/Pharm GKB GenePA134931829
Clinical trialANKS6
Miscellaneous
canSAR (ICR)ANKS6 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKS6
EVEXANKS6
GoPubMedANKS6
iHOPANKS6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:32 CET 2017

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