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ANKUB1 (ankyrin repeat and ubiquitin domain containing 1)

Identity

Alias_namesC3orf16
chromosome 3 open reading frame 16
Other alias
HGNC (Hugo) ANKUB1
LocusID (NCBI) 389161
Atlas_Id 60373
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149761439 and ends at 149792823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKUB1 (3q25.1) / ATXN2 (12q24.12)EIF2A (3q25.1) / ANKUB1 (3q25.1)WWTR1 (3q25.1) / ANKUB1 (3q25.1)
WWTR1 ANKUB1EIF2A ANKUB1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKUB1   29642
Cards
Entrez_Gene (NCBI)ANKUB1  389161  ankyrin repeat and ubiquitin domain containing 1
AliasesC3orf16
GeneCards (Weizmann)ANKUB1
Ensembl hg19 (Hinxton)ENSG00000206199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206199 [Gene_View]  chr3:149761439-149792823 [Contig_View]  ANKUB1 [Vega]
ICGC DataPortalENSG00000206199
TCGA cBioPortalANKUB1
AceView (NCBI)ANKUB1
Genatlas (Paris)ANKUB1
WikiGenes389161
SOURCE (Princeton)ANKUB1
Genetics Home Reference (NIH)ANKUB1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKUB1  -     chr3:149761439-149792823 -  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKUB1  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblANKUB1 - 3q25.1 [CytoView hg19]  ANKUB1 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBIANKUB1 [Mapview hg19]  ANKUB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027233 AK098078 AK304359 BC171805 BU686654
RefSeq transcript (Entrez)NM_001144960 NM_001315505 NM_001315506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKUB1
Cluster EST : UnigeneHs.665988 [ NCBI ]
CGAP (NCI)Hs.665988
Alternative Splicing GalleryENSG00000206199
Gene ExpressionANKUB1 [ NCBI-GEO ]   ANKUB1 [ EBI - ARRAY_EXPRESS ]   ANKUB1 [ SEEK ]   ANKUB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKUB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389161
GTEX Portal (Tissue expression)ANKUB1
Human Protein AtlasENSG00000206199-ANKUB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFN9
Splice isoforms : SwissVarA6NFN9
PhosPhoSitePlusA6NFN9
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKUB1
DMDM Disease mutations389161
Blocks (Seattle)ANKUB1
SuperfamilyA6NFN9
Human Protein Atlas [tissue]ENSG00000206199-ANKUB1 [tissue]
Peptide AtlasA6NFN9
IPIIPI00908321   IPI00939567   IPI00946912   
Protein Interaction databases
DIP (DOE-UCLA)A6NFN9
IntAct (EBI)A6NFN9
FunCoupENSG00000206199
BioGRIDANKUB1
STRING (EMBL)ANKUB1
ZODIACANKUB1
Ontologies - Pathways
QuickGOA6NFN9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKUB1
Atlas of Cancer Signalling NetworkANKUB1
Wikipedia pathwaysANKUB1
Orthology - Evolution
OrthoDB389161
GeneTree (enSembl)ENSG00000206199
Phylogenetic Trees/Animal Genes : TreeFamANKUB1
HOVERGENA6NFN9
HOGENOMA6NFN9
Homologs : HomoloGeneANKUB1
Homology/Alignments : Family Browser (UCSC)ANKUB1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCWWTR1 ANKUB1
Fusion: TCGA_MDACCEIF2A ANKUB1
Tumor Fusion PortalANKUB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKUB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKUB1
dbVarANKUB1
ClinVarANKUB1
1000_GenomesANKUB1 
Exome Variant ServerANKUB1
ExAC (Exome Aggregation Consortium)ENSG00000206199
GNOMAD BrowserENSG00000206199
Genetic variants : HAPMAP389161
Genomic Variants (DGV)ANKUB1 [DGVbeta]
DECIPHERANKUB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKUB1 
Mutations
ICGC Data PortalANKUB1 
TCGA Data PortalANKUB1 
Broad Tumor PortalANKUB1
OASIS PortalANKUB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKUB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKUB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKUB1
DgiDB (Drug Gene Interaction Database)ANKUB1
DoCM (Curated mutations)ANKUB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKUB1 (select a term)
intoGenANKUB1
Cancer3DANKUB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKUB1
MedgenANKUB1
Genetic Testing Registry ANKUB1
NextProtA6NFN9 [Medical]
TSGene389161
GENETestsANKUB1
Target ValidationANKUB1
Huge Navigator ANKUB1 [HugePedia]
snp3D : Map Gene to Disease389161
BioCentury BCIQANKUB1
ClinGenANKUB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389161
Chemical/Pharm GKB GenePA134863258
Clinical trialANKUB1
Miscellaneous
canSAR (ICR)ANKUB1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKUB1
EVEXANKUB1
GoPubMedANKUB1
iHOPANKUB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:57 CET 2017

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