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ANKZF1 (ankyrin repeat and zinc finger domain containing 1)

Identity

Alias_symbol (synonym)FLJ10415
ZNF744
Other alias
HGNC (Hugo) ANKZF1
LocusID (NCBI) 55139
Atlas_Id 60374
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219229888 and ends at 219236669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GIPC1 (19p13.12) / ANKZF1 (2q35)NPIPB7 (16q23.1) / ANKZF1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANKZF1   25527
Cards
Entrez_Gene (NCBI)ANKZF1  55139  ankyrin repeat and zinc finger domain containing 1
AliasesZNF744
GeneCards (Weizmann)ANKZF1
Ensembl hg19 (Hinxton)ENSG00000163516 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163516 [Gene_View]  chr2:219229888-219236669 [Contig_View]  ANKZF1 [Vega]
ICGC DataPortalENSG00000163516
TCGA cBioPortalANKZF1
AceView (NCBI)ANKZF1
Genatlas (Paris)ANKZF1
WikiGenes55139
SOURCE (Princeton)ANKZF1
Genetics Home Reference (NIH)ANKZF1
Genomic and cartography
GoldenPath hg38 (UCSC)ANKZF1  -     chr2:219229888-219236669 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKZF1  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblANKZF1 - 2q35 [CytoView hg19]  ANKZF1 - 2q35 [CytoView hg38]
Mapping of homologs : NCBIANKZF1 [Mapview hg19]  ANKZF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA482007 AF364318 AK001277 AK023206 AK056060
RefSeq transcript (Entrez)NM_001042410 NM_001282792 NM_018089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKZF1
Cluster EST : UnigeneHs.437647 [ NCBI ]
CGAP (NCI)Hs.437647
Alternative Splicing GalleryENSG00000163516
Gene ExpressionANKZF1 [ NCBI-GEO ]   ANKZF1 [ EBI - ARRAY_EXPRESS ]   ANKZF1 [ SEEK ]   ANKZF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ANKZF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55139
GTEX Portal (Tissue expression)ANKZF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8Y5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8Y5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8Y5
Splice isoforms : SwissVarQ9H8Y5
PhosPhoSitePlusQ9H8Y5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ANKZF1
DMDM Disease mutations55139
Blocks (Seattle)ANKZF1
SuperfamilyQ9H8Y5
Human Protein AtlasENSG00000163516
Peptide AtlasQ9H8Y5
HPRD07673
IPIIPI00335437   IPI00909687   IPI00916311   IPI00916154   IPI00915999   IPI00915857   IPI00916826   IPI00916654   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8Y5
IntAct (EBI)Q9H8Y5
FunCoupENSG00000163516
BioGRIDANKZF1
STRING (EMBL)ANKZF1
ZODIACANKZF1
Ontologies - Pathways
QuickGOQ9H8Y5
Ontology : AmiGOnucleic acid binding  thiol-dependent ubiquitin-specific protease activity  protein binding  membrane  ubiquitin-dependent ERAD pathway  Cdc48p-Npl4p-Vms1p AAA ATPase complex  metal ion binding  ubiquitin-dependent catabolism of misfolded proteins by nucleus-associated proteasome  mitochondria-associated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBInucleic acid binding  thiol-dependent ubiquitin-specific protease activity  protein binding  membrane  ubiquitin-dependent ERAD pathway  Cdc48p-Npl4p-Vms1p AAA ATPase complex  metal ion binding  ubiquitin-dependent catabolism of misfolded proteins by nucleus-associated proteasome  mitochondria-associated ubiquitin-dependent protein catabolic process  
NDEx NetworkANKZF1
Atlas of Cancer Signalling NetworkANKZF1
Wikipedia pathwaysANKZF1
Orthology - Evolution
OrthoDB55139
GeneTree (enSembl)ENSG00000163516
Phylogenetic Trees/Animal Genes : TreeFamANKZF1
HOVERGENQ9H8Y5
HOGENOMQ9H8Y5
Homologs : HomoloGeneANKZF1
Homology/Alignments : Family Browser (UCSC)ANKZF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKZF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKZF1
dbVarANKZF1
ClinVarANKZF1
1000_GenomesANKZF1 
Exome Variant ServerANKZF1
ExAC (Exome Aggregation Consortium)ANKZF1 (select the gene name)
Genetic variants : HAPMAP55139
Genomic Variants (DGV)ANKZF1 [DGVbeta]
DECIPHERANKZF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKZF1 
Mutations
ICGC Data PortalANKZF1 
TCGA Data PortalANKZF1 
Broad Tumor PortalANKZF1
OASIS PortalANKZF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANKZF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANKZF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANKZF1
DgiDB (Drug Gene Interaction Database)ANKZF1
DoCM (Curated mutations)ANKZF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKZF1 (select a term)
intoGenANKZF1
Cancer3DANKZF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANKZF1
Genetic Testing Registry ANKZF1
NextProtQ9H8Y5 [Medical]
TSGene55139
GENETestsANKZF1
Target ValidationANKZF1
Huge Navigator ANKZF1 [HugePedia]
snp3D : Map Gene to Disease55139
BioCentury BCIQANKZF1
ClinGenANKZF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55139
Chemical/Pharm GKB GenePA143485305
Clinical trialANKZF1
Miscellaneous
canSAR (ICR)ANKZF1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKZF1
EVEXANKZF1
GoPubMedANKZF1
iHOPANKZF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:28 CEST 2017

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