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ANP32B (acidic nuclear phosphoprotein 32 family member B)

Identity

Alias_namesacidic (leucine-rich) nuclear phosphoprotein 32 family
Alias_symbol (synonym)SSP29
PHAPI2
APRIL
Other alias
HGNC (Hugo) ANP32B
LocusID (NCBI) 10541
Atlas_Id 648
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97983207 and ends at 98015942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANP32B (9q22.33) / ANP32B (9q22.33)ANP32B (9q22.33) / CLIP4 (2p23.2)ANP32B (9q22.33) / GTPBP4 (10p15.3)
ANP32B (9q22.33) / MIR548H3 (6q16.1)ANP32B (9q22.33) / NCL (2q37.1)ANP32B (9q22.33) / PTPN11 (12q24.13)
ANP32B (9q22.33) / S100A10 (1q21.3)ANP32B (9q22.33) / SET (9q34.11)ANP32B (9q22.33) / TG (8q24.22)
ANP32B (9q22.33) / TTLL3 (3p25.3)ANP32E (1q21.2) / ANP32B (9q22.33)CTNNBL1 (20q11.23) / ANP32B (9q22.33)
EZR (6q25.3) / ANP32B (9q22.33)USP9X (Xp11.4) / ANP32B (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANP32B   16677
Cards
Entrez_Gene (NCBI)ANP32B  10541  acidic nuclear phosphoprotein 32 family member B
AliasesAPRIL; PHAPI2; SSP29
GeneCards (Weizmann)ANP32B
Ensembl hg19 (Hinxton)ENSG00000136938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136938 [Gene_View]  chr9:97983207-98015942 [Contig_View]  ANP32B [Vega]
ICGC DataPortalENSG00000136938
TCGA cBioPortalANP32B
AceView (NCBI)ANP32B
Genatlas (Paris)ANP32B
WikiGenes10541
SOURCE (Princeton)ANP32B
Genetics Home Reference (NIH)ANP32B
Genomic and cartography
GoldenPath hg38 (UCSC)ANP32B  -     chr9:97983207-98015942 +  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANP32B  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblANP32B - 9q22.33 [CytoView hg19]  ANP32B - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIANP32B [Mapview hg19]  ANP32B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK223454 AK313733 AW296974 BC013003 BC019658
RefSeq transcript (Entrez)NM_006401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANP32B
Cluster EST : UnigeneHs.730654 [ NCBI ]
CGAP (NCI)Hs.730654
Alternative Splicing GalleryENSG00000136938
Gene ExpressionANP32B [ NCBI-GEO ]   ANP32B [ EBI - ARRAY_EXPRESS ]   ANP32B [ SEEK ]   ANP32B [ MEM ]
Gene Expression Viewer (FireBrowse)ANP32B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10541
GTEX Portal (Tissue expression)ANP32B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92688   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92688  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92688
Splice isoforms : SwissVarQ92688
PhosPhoSitePlusQ92688
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    U2A'_phosphoprotein32A_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRRcap (SM00446)  
Conserved Domain (NCBI)ANP32B
DMDM Disease mutations10541
Blocks (Seattle)ANP32B
PDB (SRS)2ELL    2RR6   
PDB (PDBSum)2ELL    2RR6   
PDB (IMB)2ELL    2RR6   
PDB (RSDB)2ELL    2RR6   
Structural Biology KnowledgeBase2ELL    2RR6   
SCOP (Structural Classification of Proteins)2ELL    2RR6   
CATH (Classification of proteins structures)2ELL    2RR6   
SuperfamilyQ92688
Human Protein AtlasENSG00000136938
Peptide AtlasQ92688
HPRD09803
IPIIPI00007423   IPI00759824   IPI00647001   
Protein Interaction databases
DIP (DOE-UCLA)Q92688
IntAct (EBI)Q92688
FunCoupENSG00000136938
BioGRIDANP32B
STRING (EMBL)ANP32B
ZODIACANP32B
Ontologies - Pathways
QuickGOQ92688
Ontology : AmiGOvasculature development  protein binding  nucleus  nucleolus  cytoplasm  nucleosome assembly  activation of cysteine-type endopeptidase activity involved in apoptotic process  ventricular system development  histone binding  negative regulation of cell differentiation  positive regulation of protein export from nucleus  inner ear development  palate development  extracellular exosome  RNA polymerase binding  
Ontology : EGO-EBIvasculature development  protein binding  nucleus  nucleolus  cytoplasm  nucleosome assembly  activation of cysteine-type endopeptidase activity involved in apoptotic process  ventricular system development  histone binding  negative regulation of cell differentiation  positive regulation of protein export from nucleus  inner ear development  palate development  extracellular exosome  RNA polymerase binding  
NDEx NetworkANP32B
Atlas of Cancer Signalling NetworkANP32B
Wikipedia pathwaysANP32B
Orthology - Evolution
OrthoDB10541
GeneTree (enSembl)ENSG00000136938
Phylogenetic Trees/Animal Genes : TreeFamANP32B
HOVERGENQ92688
HOGENOMQ92688
Homologs : HomoloGeneANP32B
Homology/Alignments : Family Browser (UCSC)ANP32B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANP32B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANP32B
dbVarANP32B
ClinVarANP32B
1000_GenomesANP32B 
Exome Variant ServerANP32B
ExAC (Exome Aggregation Consortium)ANP32B (select the gene name)
Genetic variants : HAPMAP10541
Genomic Variants (DGV)ANP32B [DGVbeta]
DECIPHERANP32B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANP32B 
Mutations
ICGC Data PortalANP32B 
TCGA Data PortalANP32B 
Broad Tumor PortalANP32B
OASIS PortalANP32B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANP32B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANP32B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANP32B
DgiDB (Drug Gene Interaction Database)ANP32B
DoCM (Curated mutations)ANP32B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANP32B (select a term)
intoGenANP32B
Cancer3DANP32B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANP32B
Genetic Testing Registry ANP32B
NextProtQ92688 [Medical]
TSGene10541
GENETestsANP32B
Target ValidationANP32B
Huge Navigator ANP32B [HugePedia]
snp3D : Map Gene to Disease10541
BioCentury BCIQANP32B
ClinGenANP32B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10541
Chemical/Pharm GKB GenePA24812
Clinical trialANP32B
Miscellaneous
canSAR (ICR)ANP32B (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANP32B
EVEXANP32B
GoPubMedANP32B
iHOPANP32B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:46:50 CEST 2017

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