Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ANTXRL (ANTXR like)

Identity

Alias (NCBI)-
HGNC (Hugo) ANTXRL
LocusID (NCBI) 195977
Atlas_Id 60384
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46286997 and ends at 46330207 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ANTXRL   27277
Cards
Entrez_Gene (NCBI)ANTXRL    ANTXR like
Aliases
GeneCards (Weizmann)ANTXRL
Ensembl hg19 (Hinxton)ENSG00000274209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274209 [Gene_View]  ENSG00000274209 [Sequence]  chr10:46286997-46330207 [Contig_View]  ANTXRL [Vega]
ICGC DataPortalENSG00000274209
TCGA cBioPortalANTXRL
AceView (NCBI)ANTXRL
Genatlas (Paris)ANTXRL
SOURCE (Princeton)ANTXRL
Genetics Home Reference (NIH)ANTXRL
Genomic and cartography
GoldenPath hg38 (UCSC)ANTXRL  -     chr10:46286997-46330207 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANTXRL  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathANTXRL - 10q11.22 [CytoView hg19]  ANTXRL - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000274209
genome Data Viewer NCBIANTXRL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057316 DB133812 KY947541
RefSeq transcript (Entrez)NM_001278688 NM_001354208
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANTXRL
Alternative Splicing GalleryENSG00000274209
Gene ExpressionANTXRL [ NCBI-GEO ]   ANTXRL [ EBI - ARRAY_EXPRESS ]   ANTXRL [ SEEK ]   ANTXRL [ MEM ]
Gene Expression Viewer (FireBrowse)ANTXRL [ Firebrowse - Broad ]
GenevisibleExpression of ANTXRL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)195977
GTEX Portal (Tissue expression)ANTXRL
Human Protein AtlasENSG00000274209-ANTXRL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NF34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NF34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NF34
Splice isoforms : SwissVarA6NF34
PhosPhoSitePlusA6NF34
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)Anthrax_toxin_rcpt_extracel    VWF_A    vWFA_dom_sf   
Domain families : Pfam (Sanger)Anth_Ig (PF05587)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam05587    pfam00092   
Domain families : Smart (EMBL)VWA (SM00327)  
Conserved Domain (NCBI)ANTXRL
Blocks (Seattle)ANTXRL
SuperfamilyA6NF34
Human Protein Atlas [tissue]ENSG00000274209-ANTXRL [tissue]
Peptide AtlasA6NF34
IPIIPI00854623   
Protein Interaction databases
DIP (DOE-UCLA)A6NF34
IntAct (EBI)A6NF34
BioGRIDANTXRL
STRING (EMBL)ANTXRL
ZODIACANTXRL
Ontologies - Pathways
QuickGOA6NF34
Ontology : AmiGOtransmembrane signaling receptor activity  plasma membrane  cell surface  integral component of membrane  metal ion binding  toxin transport  
Ontology : EGO-EBItransmembrane signaling receptor activity  plasma membrane  cell surface  integral component of membrane  metal ion binding  toxin transport  
NDEx NetworkANTXRL
Atlas of Cancer Signalling NetworkANTXRL
Wikipedia pathwaysANTXRL
Orthology - Evolution
OrthoDB195977
GeneTree (enSembl)ENSG00000274209
Phylogenetic Trees/Animal Genes : TreeFamANTXRL
HOGENOMA6NF34
Homologs : HomoloGeneANTXRL
Homology/Alignments : Family Browser (UCSC)ANTXRL
Gene fusions - Rearrangements
Fusion : QuiverANTXRL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANTXRL [hg38]
dbVarANTXRL
ClinVarANTXRL
MonarchANTXRL
1000_GenomesANTXRL 
Exome Variant ServerANTXRL
GNOMAD BrowserENSG00000274209
Varsome BrowserANTXRL
Genomic Variants (DGV)ANTXRL [DGVbeta]
DECIPHERANTXRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANTXRL 
Mutations
ICGC Data PortalANTXRL 
TCGA Data PortalANTXRL 
Broad Tumor PortalANTXRL
OASIS PortalANTXRL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANTXRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANTXRL
DgiDB (Drug Gene Interaction Database)ANTXRL
DoCM (Curated mutations)ANTXRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANTXRL (select a term)
intoGenANTXRL
Cancer3DANTXRL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANTXRL
MedgenANTXRL
Genetic Testing Registry ANTXRL
NextProtA6NF34 [Medical]
GENETestsANTXRL
Target ValidationANTXRL
Huge Navigator ANTXRL [HugePedia]
ClinGenANTXRL
Clinical trials, drugs, therapy
MyCancerGenomeANTXRL
Protein Interactions : CTD
Pharm GKB GenePA142672602
Clinical trialANTXRL
Miscellaneous
canSAR (ICR)ANTXRL (select the gene name)
HarmonizomeANTXRL
DataMed IndexANTXRL
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANTXRL
EVEXANTXRL
GoPubMedANTXRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:45:55 CET 2020

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