Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ANTXRL (anthrax toxin receptor like)

Identity

Other alias-
HGNC (Hugo) ANTXRL
LocusID (NCBI) 195977
Atlas_Id 60384
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46286997 and ends at 46330207 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANTXRL   27277
Cards
Entrez_Gene (NCBI)ANTXRL  195977  anthrax toxin receptor like
Aliases
GeneCards (Weizmann)ANTXRL
Ensembl hg19 (Hinxton)ENSG00000274209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274209 [Gene_View]  chr10:46286997-46330207 [Contig_View]  ANTXRL [Vega]
ICGC DataPortalENSG00000274209
TCGA cBioPortalANTXRL
AceView (NCBI)ANTXRL
Genatlas (Paris)ANTXRL
WikiGenes195977
SOURCE (Princeton)ANTXRL
Genetics Home Reference (NIH)ANTXRL
Genomic and cartography
GoldenPath hg38 (UCSC)ANTXRL  -     chr10:46286997-46330207 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANTXRL  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblANTXRL - 10q11.22 [CytoView hg19]  ANTXRL - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIANTXRL [Mapview hg19]  ANTXRL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057316 DB133812
RefSeq transcript (Entrez)NM_001278688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANTXRL
Cluster EST : UnigeneHs.538515 [ NCBI ]
CGAP (NCI)Hs.538515
Alternative Splicing GalleryENSG00000274209
Gene ExpressionANTXRL [ NCBI-GEO ]   ANTXRL [ EBI - ARRAY_EXPRESS ]   ANTXRL [ SEEK ]   ANTXRL [ MEM ]
Gene Expression Viewer (FireBrowse)ANTXRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)195977
GTEX Portal (Tissue expression)ANTXRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NF34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NF34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NF34
Splice isoforms : SwissVarA6NF34
PhosPhoSitePlusA6NF34
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)Anthrax_toxin_rcpt_extracel    CRIB_dom    Ig-like_fold    VWF_A   
Domain families : Pfam (Sanger)Anth_Ig (PF05587)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam05587    pfam00092   
Domain families : Smart (EMBL)VWA (SM00327)  
Conserved Domain (NCBI)ANTXRL
DMDM Disease mutations195977
Blocks (Seattle)ANTXRL
SuperfamilyA6NF34
Human Protein AtlasENSG00000274209
Peptide AtlasA6NF34
IPIIPI00854623   
Protein Interaction databases
DIP (DOE-UCLA)A6NF34
IntAct (EBI)A6NF34
FunCoupENSG00000274209
BioGRIDANTXRL
STRING (EMBL)ANTXRL
ZODIACANTXRL
Ontologies - Pathways
QuickGOA6NF34
Ontology : AmiGOreceptor activity  integral component of membrane  metal ion binding  
Ontology : EGO-EBIreceptor activity  integral component of membrane  metal ion binding  
NDEx NetworkANTXRL
Atlas of Cancer Signalling NetworkANTXRL
Wikipedia pathwaysANTXRL
Orthology - Evolution
OrthoDB195977
GeneTree (enSembl)ENSG00000274209
Phylogenetic Trees/Animal Genes : TreeFamANTXRL
HOVERGENA6NF34
HOGENOMA6NF34
Homologs : HomoloGeneANTXRL
Homology/Alignments : Family Browser (UCSC)ANTXRL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANTXRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANTXRL
dbVarANTXRL
ClinVarANTXRL
1000_GenomesANTXRL 
Exome Variant ServerANTXRL
ExAC (Exome Aggregation Consortium)ANTXRL (select the gene name)
Genetic variants : HAPMAP195977
Genomic Variants (DGV)ANTXRL [DGVbeta]
DECIPHERANTXRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANTXRL 
Mutations
ICGC Data PortalANTXRL 
TCGA Data PortalANTXRL 
Broad Tumor PortalANTXRL
OASIS PortalANTXRL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANTXRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANTXRL
DgiDB (Drug Gene Interaction Database)ANTXRL
DoCM (Curated mutations)ANTXRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANTXRL (select a term)
intoGenANTXRL
Cancer3DANTXRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANTXRL
Genetic Testing Registry ANTXRL
NextProtA6NF34 [Medical]
TSGene195977
GENETestsANTXRL
Target ValidationANTXRL
Huge Navigator ANTXRL [HugePedia]
snp3D : Map Gene to Disease195977
BioCentury BCIQANTXRL
ClinGenANTXRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD195977
Chemical/Pharm GKB GenePA142672602
Clinical trialANTXRL
Miscellaneous
canSAR (ICR)ANTXRL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANTXRL
EVEXANTXRL
GoPubMedANTXRL
iHOPANTXRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:29 CEST 2017

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