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ANXA13 (annexin A13)

Identity

Alias_namesANX13
Other aliasISA
HGNC (Hugo) ANXA13
LocusID (NCBI) 312
Atlas_Id 654
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 123680794 and ends at 123737426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SHANK2 (11q13.3) / ANXA13 (8q24.13)SHANK2 11q13.3 / ANXA13 8q24.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANXA13   536
Cards
Entrez_Gene (NCBI)ANXA13  312  annexin A13
AliasesANX13; ISA
GeneCards (Weizmann)ANXA13
Ensembl hg19 (Hinxton)ENSG00000104537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104537 [Gene_View]  chr8:123680794-123737426 [Contig_View]  ANXA13 [Vega]
ICGC DataPortalENSG00000104537
TCGA cBioPortalANXA13
AceView (NCBI)ANXA13
Genatlas (Paris)ANXA13
WikiGenes312
SOURCE (Princeton)ANXA13
Genetics Home Reference (NIH)ANXA13
Genomic and cartography
GoldenPath hg38 (UCSC)ANXA13  -     chr8:123680794-123737426 -  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANXA13  -     8q24.13   [Description]    (hg19-Feb_2009)
EnsemblANXA13 - 8q24.13 [CytoView hg19]  ANXA13 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBIANXA13 [Mapview hg19]  ANXA13 [Mapview hg38]
OMIM602573   
Gene and transcription
Genbank (Entrez)AI678696 AJ306450 AK057781 AK223374 AK290281
RefSeq transcript (Entrez)NM_001003954 NM_004306
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANXA13
Cluster EST : UnigeneHs.181107 [ NCBI ]
CGAP (NCI)Hs.181107
Alternative Splicing GalleryENSG00000104537
Gene ExpressionANXA13 [ NCBI-GEO ]   ANXA13 [ EBI - ARRAY_EXPRESS ]   ANXA13 [ SEEK ]   ANXA13 [ MEM ]
Gene Expression Viewer (FireBrowse)ANXA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)312
GTEX Portal (Tissue expression)ANXA13
Human Protein AtlasENSG00000104537-ANXA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP27216   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP27216  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP27216
Splice isoforms : SwissVarP27216
PhosPhoSitePlusP27216
Domaine pattern : Prosite (Expaxy)ANNEXIN (PS00223)   
Domains : Interpro (EBI)Annexin    Annexin_repeat    Annexin_repeat_CS    ANX13   
Domain families : Pfam (Sanger)Annexin (PF00191)   
Domain families : Pfam (NCBI)pfam00191   
Domain families : Smart (EMBL)ANX (SM00335)  
Conserved Domain (NCBI)ANXA13
DMDM Disease mutations312
Blocks (Seattle)ANXA13
SuperfamilyP27216
Human Protein Atlas [tissue]ENSG00000104537-ANXA13 [tissue]
Peptide AtlasP27216
HPRD03984
IPIIPI00017337   IPI00465213   IPI00976536   
Protein Interaction databases
DIP (DOE-UCLA)P27216
IntAct (EBI)P27216
FunCoupENSG00000104537
BioGRIDANXA13
STRING (EMBL)ANXA13
ZODIACANXA13
Ontologies - Pathways
QuickGOP27216
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  extracellular space  nucleoplasm  plasma membrane  plasma membrane  cell differentiation  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  extracellular space  nucleoplasm  plasma membrane  plasma membrane  cell differentiation  extracellular exosome  
NDEx NetworkANXA13
Atlas of Cancer Signalling NetworkANXA13
Wikipedia pathwaysANXA13
Orthology - Evolution
OrthoDB312
GeneTree (enSembl)ENSG00000104537
Phylogenetic Trees/Animal Genes : TreeFamANXA13
HOVERGENP27216
HOGENOMP27216
Homologs : HomoloGeneANXA13
Homology/Alignments : Family Browser (UCSC)ANXA13
Gene fusions - Rearrangements
Fusion : MitelmanSHANK2/ANXA13 [11q13.3/8q24.13]  [t(8;11)(q24;q13)]  
Fusion: TCGA_MDACCSHANK2 11q13.3 ANXA13 8q24.13 BRCA
Tumor Fusion PortalANXA13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANXA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANXA13
dbVarANXA13
ClinVarANXA13
1000_GenomesANXA13 
Exome Variant ServerANXA13
ExAC (Exome Aggregation Consortium)ENSG00000104537
GNOMAD BrowserENSG00000104537
Genetic variants : HAPMAP312
Genomic Variants (DGV)ANXA13 [DGVbeta]
DECIPHERANXA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANXA13 
Mutations
ICGC Data PortalANXA13 
TCGA Data PortalANXA13 
Broad Tumor PortalANXA13
OASIS PortalANXA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANXA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANXA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANXA13
DgiDB (Drug Gene Interaction Database)ANXA13
DoCM (Curated mutations)ANXA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANXA13 (select a term)
intoGenANXA13
Cancer3DANXA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602573   
Orphanet
DisGeNETANXA13
MedgenANXA13
Genetic Testing Registry ANXA13
NextProtP27216 [Medical]
TSGene312
GENETestsANXA13
Target ValidationANXA13
Huge Navigator ANXA13 [HugePedia]
snp3D : Map Gene to Disease312
BioCentury BCIQANXA13
ClinGenANXA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD312
Chemical/Pharm GKB GenePA24826
Clinical trialANXA13
Miscellaneous
canSAR (ICR)ANXA13 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANXA13
EVEXANXA13
GoPubMedANXA13
iHOPANXA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:09 CET 2017

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