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ANXA2P2 (annexin A2 pseudogene 2)

Identity

Alias_namesANX2P2
ANX2L2
LPC2B
Other alias
HGNC (Hugo) ANXA2P2
LocusID (NCBI) 304
Atlas_Id 60387
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33624223 and ends at 33625532 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANXA2P2   539
Cards
Entrez_Gene (NCBI)ANXA2P2  304  annexin A2 pseudogene 2
AliasesANX2L2; ANX2P2; LPC2B
GeneCards (Weizmann)ANXA2P2
Ensembl hg19 (Hinxton) [Gene_View]  chr9:33624223-33625532 [Contig_View]  ANXA2P2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:33624223-33625532 [Contig_View]  ANXA2P2 [Vega]
TCGA cBioPortalANXA2P2
AceView (NCBI)ANXA2P2
Genatlas (Paris)ANXA2P2
WikiGenes304
SOURCE (Princeton)ANXA2P2
Genetics Home Reference (NIH)ANXA2P2
Genomic and cartography
GoldenPath hg19 (UCSC)ANXA2P2  -     chr9:33624223-33625532 +  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANXA2P2  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblANXA2P2 - 9p13.3 [CytoView hg19]  ANXA2P2 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIANXA2P2 [Mapview hg19]  ANXA2P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M62898
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_001337 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)ANXA2P2
Cluster EST : UnigeneHs.534301 [ NCBI ]
CGAP (NCI)Hs.534301
Gene ExpressionANXA2P2 [ NCBI-GEO ]   ANXA2P2 [ EBI - ARRAY_EXPRESS ]   ANXA2P2 [ SEEK ]   ANXA2P2 [ MEM ]
Gene Expression Viewer (FireBrowse)ANXA2P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)304
GTEX Portal (Tissue expression)ANXA2P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMY6
Splice isoforms : SwissVarA6NMY6
PhosPhoSitePlusA6NMY6
Domaine pattern : Prosite (Expaxy)ANNEXIN (PS00223)   
Domains : Interpro (EBI)Annexin    Annexin_repeat    Annexin_repeat_CS    AnnexinII   
Domain families : Pfam (Sanger)Annexin (PF00191)   
Domain families : Pfam (NCBI)pfam00191   
Domain families : Smart (EMBL)ANX (SM00335)  
Conserved Domain (NCBI)ANXA2P2
DMDM Disease mutations304
Blocks (Seattle)ANXA2P2
SuperfamilyA6NMY6
Peptide AtlasA6NMY6
IPIIPI00334627   
Protein Interaction databases
DIP (DOE-UCLA)A6NMY6
IntAct (EBI)A6NMY6
BioGRIDANXA2P2
STRING (EMBL)ANXA2P2
ZODIACANXA2P2
Ontologies - Pathways
QuickGOA6NMY6
Ontology : AmiGOphospholipase inhibitor activity  calcium ion binding  calcium-dependent phospholipid binding  basement membrane  cytoskeletal protein binding  melanosome  negative regulation of catalytic activity  extracellular exosome  
Ontology : EGO-EBIphospholipase inhibitor activity  calcium ion binding  calcium-dependent phospholipid binding  basement membrane  cytoskeletal protein binding  melanosome  negative regulation of catalytic activity  extracellular exosome  
NDEx NetworkANXA2P2
Atlas of Cancer Signalling NetworkANXA2P2
Wikipedia pathwaysANXA2P2
Orthology - Evolution
OrthoDB304
Phylogenetic Trees/Animal Genes : TreeFamANXA2P2
HOVERGENA6NMY6
HOGENOMA6NMY6
Homologs : HomoloGeneANXA2P2
Homology/Alignments : Family Browser (UCSC)ANXA2P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANXA2P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANXA2P2
dbVarANXA2P2
ClinVarANXA2P2
1000_GenomesANXA2P2 
Exome Variant ServerANXA2P2
ExAC (Exome Aggregation Consortium)ANXA2P2 (select the gene name)
Genetic variants : HAPMAP304
Genomic Variants (DGV)ANXA2P2 [DGVbeta]
DECIPHER (Syndromes)9:33624223-33625532  
CONAN: Copy Number AnalysisANXA2P2 
Mutations
ICGC Data PortalANXA2P2 
TCGA Data PortalANXA2P2 
Broad Tumor PortalANXA2P2
OASIS PortalANXA2P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANXA2P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANXA2P2
DgiDB (Drug Gene Interaction Database)ANXA2P2
DoCM (Curated mutations)ANXA2P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANXA2P2 (select a term)
intoGenANXA2P2
Cancer3DANXA2P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenANXA2P2
Genetic Testing Registry ANXA2P2
NextProtA6NMY6 [Medical]
TSGene304
GENETestsANXA2P2
Huge Navigator ANXA2P2 [HugePedia]
snp3D : Map Gene to Disease304
BioCentury BCIQANXA2P2
ClinGenANXA2P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD304
Chemical/Pharm GKB GenePA24829
Clinical trialANXA2P2
Miscellaneous
canSAR (ICR)ANXA2P2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANXA2P2
EVEXANXA2P2
GoPubMedANXA2P2
iHOPANXA2P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:35 CET 2017

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