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ANXA3 (annexin A3)

Identity

Alias_namesANX3
Other alias
HGNC (Hugo) ANXA3
LocusID (NCBI) 306
Atlas_Id 51407
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 78551588 and ends at 78610451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPR107 (9q34.11) / ANXA3 (4q21.21)UQCRFS1 (19q12) / ANXA3 (4q21.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANXA3   541
Cards
Entrez_Gene (NCBI)ANXA3  306  annexin A3
AliasesANX3
GeneCards (Weizmann)ANXA3
Ensembl hg19 (Hinxton)ENSG00000138772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138772 [Gene_View]  chr4:78551588-78610451 [Contig_View]  ANXA3 [Vega]
ICGC DataPortalENSG00000138772
TCGA cBioPortalANXA3
AceView (NCBI)ANXA3
Genatlas (Paris)ANXA3
WikiGenes306
SOURCE (Princeton)ANXA3
Genetics Home Reference (NIH)ANXA3
Genomic and cartography
GoldenPath hg38 (UCSC)ANXA3  -     chr4:78551588-78610451 +  4q21.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANXA3  -     4q21.21   [Description]    (hg19-Feb_2009)
EnsemblANXA3 - 4q21.21 [CytoView hg19]  ANXA3 - 4q21.21 [CytoView hg38]
Mapping of homologs : NCBIANXA3 [Mapview hg19]  ANXA3 [Mapview hg38]
OMIM106490   
Gene and transcription
Genbank (Entrez)AB209868 AK313945 BC000871 BU674495 BX336217
RefSeq transcript (Entrez)NM_005139
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANXA3
Cluster EST : UnigeneHs.480042 [ NCBI ]
CGAP (NCI)Hs.480042
Alternative Splicing GalleryENSG00000138772
Gene ExpressionANXA3 [ NCBI-GEO ]   ANXA3 [ EBI - ARRAY_EXPRESS ]   ANXA3 [ SEEK ]   ANXA3 [ MEM ]
Gene Expression Viewer (FireBrowse)ANXA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)306
GTEX Portal (Tissue expression)ANXA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12429
Splice isoforms : SwissVarP12429
PhosPhoSitePlusP12429
Domaine pattern : Prosite (Expaxy)ANNEXIN (PS00223)   
Domains : Interpro (EBI)Annexin    Annexin_repeat    Annexin_repeat_CS    ANX3   
Domain families : Pfam (Sanger)Annexin (PF00191)   
Domain families : Pfam (NCBI)pfam00191   
Domain families : Smart (EMBL)ANX (SM00335)  
Conserved Domain (NCBI)ANXA3
DMDM Disease mutations306
Blocks (Seattle)ANXA3
PDB (SRS)1AII    1AXN   
PDB (PDBSum)1AII    1AXN   
PDB (IMB)1AII    1AXN   
PDB (RSDB)1AII    1AXN   
Structural Biology KnowledgeBase1AII    1AXN   
SCOP (Structural Classification of Proteins)1AII    1AXN   
CATH (Classification of proteins structures)1AII    1AXN   
SuperfamilyP12429
Human Protein AtlasENSG00000138772
Peptide AtlasP12429
HPRD00111
IPIIPI00024095   IPI00555557   IPI00964070   IPI00964340   IPI00966427   IPI00966703   IPI00965251   
Protein Interaction databases
DIP (DOE-UCLA)P12429
IntAct (EBI)P12429
FunCoupENSG00000138772
BioGRIDANXA3
STRING (EMBL)ANXA3
ZODIACANXA3
Ontologies - Pathways
QuickGOP12429
Ontology : AmiGOcalcium ion binding  calcium-dependent phospholipid binding  cytoplasm  cytosol  plasma membrane  phagocytosis  positive regulation of endothelial cell migration  membrane  phospholipase A2 inhibitor activity  hippocampus development  axon  dendrite  phagocytic vesicle membrane  animal organ regeneration  specific granule  defense response to bacterium  neuronal cell body  negative regulation of catalytic activity  neutrophil degranulation  positive regulation of angiogenesis  calcium-dependent protein binding  positive regulation of DNA metabolic process  positive regulation of sequence-specific DNA binding transcription factor activity  response to glucocorticoid  extracellular exosome  response to growth factor  
Ontology : EGO-EBIcalcium ion binding  calcium-dependent phospholipid binding  cytoplasm  cytosol  plasma membrane  phagocytosis  positive regulation of endothelial cell migration  membrane  phospholipase A2 inhibitor activity  hippocampus development  axon  dendrite  phagocytic vesicle membrane  animal organ regeneration  specific granule  defense response to bacterium  neuronal cell body  negative regulation of catalytic activity  neutrophil degranulation  positive regulation of angiogenesis  calcium-dependent protein binding  positive regulation of DNA metabolic process  positive regulation of sequence-specific DNA binding transcription factor activity  response to glucocorticoid  extracellular exosome  response to growth factor  
NDEx NetworkANXA3
Atlas of Cancer Signalling NetworkANXA3
Wikipedia pathwaysANXA3
Orthology - Evolution
OrthoDB306
GeneTree (enSembl)ENSG00000138772
Phylogenetic Trees/Animal Genes : TreeFamANXA3
HOVERGENP12429
HOGENOMP12429
Homologs : HomoloGeneANXA3
Homology/Alignments : Family Browser (UCSC)ANXA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANXA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANXA3
dbVarANXA3
ClinVarANXA3
1000_GenomesANXA3 
Exome Variant ServerANXA3
ExAC (Exome Aggregation Consortium)ANXA3 (select the gene name)
Genetic variants : HAPMAP306
Genomic Variants (DGV)ANXA3 [DGVbeta]
DECIPHERANXA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANXA3 
Mutations
ICGC Data PortalANXA3 
TCGA Data PortalANXA3 
Broad Tumor PortalANXA3
OASIS PortalANXA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANXA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANXA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANXA3
DgiDB (Drug Gene Interaction Database)ANXA3
DoCM (Curated mutations)ANXA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANXA3 (select a term)
intoGenANXA3
Cancer3DANXA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM106490   
Orphanet
MedgenANXA3
Genetic Testing Registry ANXA3
NextProtP12429 [Medical]
TSGene306
GENETestsANXA3
Target ValidationANXA3
Huge Navigator ANXA3 [HugePedia]
snp3D : Map Gene to Disease306
BioCentury BCIQANXA3
ClinGenANXA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD306
Chemical/Pharm GKB GenePA24831
Clinical trialANXA3
Miscellaneous
canSAR (ICR)ANXA3 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANXA3
EVEXANXA3
GoPubMedANXA3
iHOPANXA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:23:52 CEST 2017

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