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ANXA6 (annexin A6)

Identity

Other namesANX6
CBP68
HGNC (Hugo) ANXA6
LocusID (NCBI) 309
Atlas_Id 50196
Location 5q33.1
Location_base_pair Starts at 150480267 and ends at 150537443 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANXA6 (5q33.1) / ANXA6 (5q33.1)MAFG (17q25.3) / ANXA6 (5q33.1)SLC14A2 (18q12.3) / ANXA6 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANXA6   544
Cards
Entrez_Gene (NCBI)ANXA6  309  annexin A6
AliasesANX6; CBP68
GeneCards (Weizmann)ANXA6
Ensembl hg19 (Hinxton)ENSG00000197043 [Gene_View]  chr5:150480267-150537443 [Contig_View]  ANXA6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197043 [Gene_View]  chr5:150480267-150537443 [Contig_View]  ANXA6 [Vega]
ICGC DataPortalENSG00000197043
TCGA cBioPortalANXA6
AceView (NCBI)ANXA6
Genatlas (Paris)ANXA6
WikiGenes309
SOURCE (Princeton)ANXA6
Genomic and cartography
GoldenPath hg19 (UCSC)ANXA6  -     chr5:150480267-150537443 -  5q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ANXA6  -     5q33.1   [Description]    (hg38-Dec_2013)
EnsemblANXA6 - 5q33.1 [CytoView hg19]  ANXA6 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBIANXA6 [Mapview hg19]  ANXA6 [Mapview hg38]
OMIM114070   
Gene and transcription
Genbank (Entrez)AI566871 AK126836 AK130077 AK290672 AK298582
RefSeq transcript (Entrez)NM_001155 NM_001193544 NM_004033
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)ANXA6
Cluster EST : UnigeneHs.412117 [ NCBI ]
CGAP (NCI)Hs.412117
Alternative Splicing GalleryENSG00000197043
Gene ExpressionANXA6 [ NCBI-GEO ]   ANXA6 [ EBI - ARRAY_EXPRESS ]   ANXA6 [ SEEK ]   ANXA6 [ MEM ]
Gene Expression Viewer (FireBrowse)ANXA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)309
GTEX Portal (Tissue expression)ANXA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08133 (Uniprot)
NextProtP08133  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08133
Splice isoforms : SwissVarP08133 (Swissvar)
PhosPhoSitePlusP08133
Domaine pattern : Prosite (Expaxy)ANNEXIN (PS00223)   
Domains : Interpro (EBI)Annexin    Annexin_repeat    Annexin_repeat_CS    AnnexinVI   
Domain families : Pfam (Sanger)Annexin (PF00191)   
Domain families : Pfam (NCBI)pfam00191   
Domain families : Smart (EMBL)ANX (SM00335)  
DMDM Disease mutations309
Blocks (Seattle)ANXA6
PDB (SRS)1M9I   
PDB (PDBSum)1M9I   
PDB (IMB)1M9I   
PDB (RSDB)1M9I   
Structural Biology KnowledgeBase1M9I   
SCOP (Structural Classification of Proteins)1M9I   
CATH (Classification of proteins structures)1M9I   
SuperfamilyP08133
Human Protein AtlasENSG00000197043
Peptide AtlasP08133
HPRD00231
IPIIPI00221226   IPI00002459   IPI00978313   IPI00975868   IPI01011319   IPI00442825   IPI00974274   IPI00982352   IPI00981703   IPI00982995   IPI00985043   IPI00974094   IPI00979012   
Protein Interaction databases
DIP (DOE-UCLA)P08133
IntAct (EBI)P08133
FunCoupENSG00000197043
BioGRIDANXA6
STRING (EMBL)ANXA6
ZODIACANXA6
Ontologies - Pathways
QuickGOP08133
Ontology : AmiGOcalcium ion binding  protein binding  GTP binding  calcium-dependent phospholipid binding  nucleus  mitochondrion  lysosomal membrane  focal adhesion  calcium ion transport  regulation of muscle contraction  lipid binding  intercalated disc  ligand-gated ion channel activity  cholesterol binding  membrane  apical plasma membrane  late endosome membrane  protein complex binding  ion transmembrane transport  sarcolemma  melanosome  protein homodimerization activity  protein complex  calcium-dependent protein binding  perinuclear region of cytoplasm  protein homooligomerization  mitochondrial calcium ion homeostasis  extracellular exosome  apoptotic signaling pathway  
Ontology : EGO-EBIcalcium ion binding  protein binding  GTP binding  calcium-dependent phospholipid binding  nucleus  mitochondrion  lysosomal membrane  focal adhesion  calcium ion transport  regulation of muscle contraction  lipid binding  intercalated disc  ligand-gated ion channel activity  cholesterol binding  membrane  apical plasma membrane  late endosome membrane  protein complex binding  ion transmembrane transport  sarcolemma  melanosome  protein homodimerization activity  protein complex  calcium-dependent protein binding  perinuclear region of cytoplasm  protein homooligomerization  mitochondrial calcium ion homeostasis  extracellular exosome  apoptotic signaling pathway  
NDEx Network
Atlas of Cancer Signalling NetworkANXA6
Wikipedia pathwaysANXA6
Orthology - Evolution
OrthoDB309
GeneTree (enSembl)ENSG00000197043
Phylogenetic Trees/Animal Genes : TreeFamANXA6
Homologs : HomoloGeneANXA6
Homology/Alignments : Family Browser (UCSC)ANXA6
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerANXA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANXA6
dbVarANXA6
ClinVarANXA6
1000_GenomesANXA6 
Exome Variant ServerANXA6
ExAC (Exome Aggregation Consortium)ANXA6 (select the gene name)
Genetic variants : HAPMAP309
Genomic Variants (DGV)ANXA6 [DGVbeta]
Mutations
ICGC Data PortalANXA6 
TCGA Data PortalANXA6 
Broad Tumor PortalANXA6
OASIS PortalANXA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANXA6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANXA6
DgiDB (Drug Gene Interaction Database)ANXA6
DoCM (Curated mutations)ANXA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANXA6 (select a term)
intoGenANXA6
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:150480267-150537443  ENSG00000197043
CONAN: Copy Number AnalysisANXA6 
Mutations and Diseases : HGMDANXA6
OMIM114070   
MedgenANXA6
Genetic Testing Registry ANXA6
NextProtP08133 [Medical]
TSGene309
GENETestsANXA6
Huge Navigator ANXA6 [HugePedia]
snp3D : Map Gene to Disease309
BioCentury BCIQANXA6
ClinGenANXA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD309
Chemical/Pharm GKB GenePA24834
Clinical trialANXA6
Miscellaneous
canSAR (ICR)ANXA6 (select the gene name)
Probes
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANXA6
EVEXANXA6
GoPubMedANXA6
iHOPANXA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:53:54 CEST 2016

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