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ANXA7 (annexin A7)

Identity

Alias_namesANX7
Other aliasSNX
SYNEXIN
HGNC (Hugo) ANXA7
LocusID (NCBI) 310
Atlas_Id 657
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73375101 and ends at 73414085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANXA7 (10q22.2) / ANXA7 (10q22.2)ANXA7 (10q22.2) / DNAH12 (3p14.3)ANXA7 (10q22.2) / LGALS12 (11q12.3)
HBG1 (11p15.4) / ANXA7 (10q22.2)ANXA7 10q22.2 / LGALS12 11q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ANXA7   545
Cards
Entrez_Gene (NCBI)ANXA7  310  annexin A7
AliasesANX7; SNX; SYNEXIN
GeneCards (Weizmann)ANXA7
Ensembl hg19 (Hinxton)ENSG00000138279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138279 [Gene_View]  chr10:73375101-73414085 [Contig_View]  ANXA7 [Vega]
ICGC DataPortalENSG00000138279
TCGA cBioPortalANXA7
AceView (NCBI)ANXA7
Genatlas (Paris)ANXA7
WikiGenes310
SOURCE (Princeton)ANXA7
Genetics Home Reference (NIH)ANXA7
Genomic and cartography
GoldenPath hg38 (UCSC)ANXA7  -     chr10:73375101-73414085 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANXA7  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblANXA7 - 10q22.2 [CytoView hg19]  ANXA7 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIANXA7 [Mapview hg19]  ANXA7 [Mapview hg38]
OMIM186360   
Gene and transcription
Genbank (Entrez)AB062429 AK222552 AK295319 AK300086 AK301681
RefSeq transcript (Entrez)NM_001156 NM_001320879 NM_001320880 NM_004034
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANXA7
Cluster EST : UnigeneHs.631827 [ NCBI ]
CGAP (NCI)Hs.631827
Alternative Splicing GalleryENSG00000138279
Gene ExpressionANXA7 [ NCBI-GEO ]   ANXA7 [ EBI - ARRAY_EXPRESS ]   ANXA7 [ SEEK ]   ANXA7 [ MEM ]
Gene Expression Viewer (FireBrowse)ANXA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)310
GTEX Portal (Tissue expression)ANXA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20073   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20073  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20073
Splice isoforms : SwissVarP20073
PhosPhoSitePlusP20073
Domaine pattern : Prosite (Expaxy)ANNEXIN (PS00223)   
Domains : Interpro (EBI)Annexin    Annexin_repeat    Annexin_repeat_CS    ANX7    ANX7_chordates   
Domain families : Pfam (Sanger)Annexin (PF00191)   
Domain families : Pfam (NCBI)pfam00191   
Domain families : Smart (EMBL)ANX (SM00335)  
Conserved Domain (NCBI)ANXA7
DMDM Disease mutations310
Blocks (Seattle)ANXA7
SuperfamilyP20073
Human Protein AtlasENSG00000138279
Peptide AtlasP20073
HPRD01720
IPIIPI00002460   IPI00021771   IPI00953297   IPI01011531   IPI00647899   
Protein Interaction databases
DIP (DOE-UCLA)P20073
IntAct (EBI)P20073
FunCoupENSG00000138279
BioGRIDANXA7
STRING (EMBL)ANXA7
ZODIACANXA7
Ontologies - Pathways
QuickGOP20073
Ontology : AmiGORNA binding  integrin binding  calcium ion binding  protein binding  calcium-dependent phospholipid binding  nucleus  nuclear envelope  endoplasmic reticulum membrane  cytosol  plasma membrane  cellular calcium ion homeostasis  autophagy  hemostasis  cell proliferation  regulation of cell shape  response to salt stress  cellular water homeostasis  negative regulation of gene expression  response to organic cyclic compound  membrane  epithelial cell differentiation  social behavior  chromaffin granule membrane  calcium-dependent protein binding  response to calcium ion  membrane fusion  extracellular exosome  
Ontology : EGO-EBIRNA binding  integrin binding  calcium ion binding  protein binding  calcium-dependent phospholipid binding  nucleus  nuclear envelope  endoplasmic reticulum membrane  cytosol  plasma membrane  cellular calcium ion homeostasis  autophagy  hemostasis  cell proliferation  regulation of cell shape  response to salt stress  cellular water homeostasis  negative regulation of gene expression  response to organic cyclic compound  membrane  epithelial cell differentiation  social behavior  chromaffin granule membrane  calcium-dependent protein binding  response to calcium ion  membrane fusion  extracellular exosome  
NDEx NetworkANXA7
Atlas of Cancer Signalling NetworkANXA7
Wikipedia pathwaysANXA7
Orthology - Evolution
OrthoDB310
GeneTree (enSembl)ENSG00000138279
Phylogenetic Trees/Animal Genes : TreeFamANXA7
HOVERGENP20073
HOGENOMP20073
Homologs : HomoloGeneANXA7
Homology/Alignments : Family Browser (UCSC)ANXA7
Gene fusions - Rearrangements
Fusion : MitelmanANXA7/LGALS12 [10q22.2/11q12.3]  
Fusion: TCGAANXA7 10q22.2 LGALS12 11q12.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANXA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANXA7
dbVarANXA7
ClinVarANXA7
1000_GenomesANXA7 
Exome Variant ServerANXA7
ExAC (Exome Aggregation Consortium)ANXA7 (select the gene name)
Genetic variants : HAPMAP310
Genomic Variants (DGV)ANXA7 [DGVbeta]
DECIPHERANXA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANXA7 
Mutations
ICGC Data PortalANXA7 
TCGA Data PortalANXA7 
Broad Tumor PortalANXA7
OASIS PortalANXA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICANXA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDANXA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ANXA7
DgiDB (Drug Gene Interaction Database)ANXA7
DoCM (Curated mutations)ANXA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANXA7 (select a term)
intoGenANXA7
Cancer3DANXA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186360   
Orphanet
MedgenANXA7
Genetic Testing Registry ANXA7
NextProtP20073 [Medical]
TSGene310
GENETestsANXA7
Target ValidationANXA7
Huge Navigator ANXA7 [HugePedia]
snp3D : Map Gene to Disease310
BioCentury BCIQANXA7
ClinGenANXA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD310
Chemical/Pharm GKB GenePA24835
Clinical trialANXA7
Miscellaneous
canSAR (ICR)ANXA7 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANXA7
EVEXANXA7
GoPubMedANXA7
iHOPANXA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:52 CEST 2017

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