Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AOPEP (aminopeptidase O (putative))

Identity

Alias (NCBI)AP-O
APO
C90RF3
C9orf3
ONPEP
HGNC (Hugo) AOPEP
HGNC Alias symbC90RF3
FLJ14675
APO
AP-O
HGNC Previous nameC9orf3
HGNC Previous namechromosome 9 open reading frame 3
LocusID (NCBI) 84909
Atlas_Id 57065
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 94726669 and ends at 95087218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)AOPEP   1361
Cards
Entrez_Gene (NCBI)AOPEP    aminopeptidase O (putative)
AliasesAP-O; APO; C90RF3; C9orf3; 
ONPEP
GeneCards (Weizmann)AOPEP
Ensembl hg19 (Hinxton)ENSG00000148120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148120 [Gene_View]  ENSG00000148120 [Sequence]  chr9:94726669-95087218 [Contig_View]  AOPEP [Vega]
ICGC DataPortalENSG00000148120
TCGA cBioPortalAOPEP
AceView (NCBI)AOPEP
Genatlas (Paris)AOPEP
SOURCE (Princeton)AOPEP
Genetics Home Reference (NIH)AOPEP
Genomic and cartography
GoldenPath hg38 (UCSC)AOPEP  -     chr9:94726669-95087218 +  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AOPEP  -     9q22.32   [Description]    (hg19-Feb_2009)
GoldenPathAOPEP - 9q22.32 [CytoView hg19]  AOPEP - 9q22.32 [CytoView hg38]
ImmunoBaseENSG00000148120
genome Data Viewer NCBIAOPEP [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF043896 AF043897 AI982632 AJ560639 AK027581
RefSeq transcript (Entrez)NM_001193329 NM_001193330 NM_001193331 NM_001386061 NM_001386062 NM_001386063 NM_001386066 NM_001386067 NM_001386068 NM_001386069 NM_001386070 NM_001386071 NM_001386072 NM_001386073 NM_001386074 NM_001386075 NM_001386076 NM_032823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AOPEP
Alternative Splicing GalleryENSG00000148120
Gene ExpressionAOPEP [ NCBI-GEO ]   AOPEP [ EBI - ARRAY_EXPRESS ]   AOPEP [ SEEK ]   AOPEP [ MEM ]
Gene Expression Viewer (FireBrowse)AOPEP [ Firebrowse - Broad ]
GenevisibleExpression of AOPEP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84909
GTEX Portal (Tissue expression)AOPEP
Human Protein AtlasENSG00000148120-AOPEP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M6
Splice isoforms : SwissVarQ8N6M6
PhosPhoSitePlusQ8N6M6
Domains : Interpro (EBI)Aminopeptidase_N-like_N    AOPep    ARM-type_fold    M1_LTA-4_hydro/amino_C_sf    M1_LTA4H    Peptidase_M1_C    Peptidase_M1_dom   
Domain families : Pfam (Sanger)Leuk-A4-hydro_C (PF09127)    Peptidase_M1 (PF01433)   
Domain families : Pfam (NCBI)pfam09127    pfam01433   
Domain families : Smart (EMBL)Leuk-A4-hydro_C (SM01263)  
Conserved Domain (NCBI)AOPEP
Blocks (Seattle)AOPEP
SuperfamilyQ8N6M6
Human Protein Atlas [tissue]ENSG00000148120-AOPEP [tissue]
Peptide AtlasQ8N6M6
IPIIPI00163493   IPI00171144   IPI00554492   IPI00647187   IPI00909505   IPI00908509   IPI00552364   IPI00187032   IPI00552746   IPI00978523   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M6
IntAct (EBI)Q8N6M6
BioGRIDAOPEP
STRING (EMBL)AOPEP
ZODIACAOPEP
Ontologies - Pathways
QuickGOQ8N6M6
Ontology : AmiGOangiotensin maturation  nucleolus  nucleolus  cytosol  zinc ion binding  metalloaminopeptidase activity  
Ontology : EGO-EBIangiotensin maturation  nucleolus  nucleolus  cytosol  zinc ion binding  metalloaminopeptidase activity  
NDEx NetworkAOPEP
Atlas of Cancer Signalling NetworkAOPEP
Wikipedia pathwaysAOPEP
Orthology - Evolution
OrthoDB84909
GeneTree (enSembl)ENSG00000148120
Phylogenetic Trees/Animal Genes : TreeFamAOPEP
HOGENOMQ8N6M6
Homologs : HomoloGeneAOPEP
Homology/Alignments : Family Browser (UCSC)AOPEP
Gene fusions - Rearrangements
Fusion : QuiverAOPEP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAOPEP [hg38]
dbVarAOPEP
ClinVarAOPEP
MonarchAOPEP
1000_GenomesAOPEP 
Exome Variant ServerAOPEP
GNOMAD BrowserENSG00000148120
Varsome BrowserAOPEP
Genomic Variants (DGV)AOPEP [DGVbeta]
DECIPHERAOPEP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAOPEP 
Mutations
ICGC Data PortalAOPEP 
TCGA Data PortalAOPEP 
Broad Tumor PortalAOPEP
OASIS PortalAOPEP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAOPEP
BioMutasearch AOPEP
DgiDB (Drug Gene Interaction Database)AOPEP
DoCM (Curated mutations)AOPEP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AOPEP (select a term)
intoGenAOPEP
Cancer3DAOPEP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAOPEP
MedgenAOPEP
Genetic Testing Registry AOPEP
NextProtQ8N6M6 [Medical]
GENETestsAOPEP
Target ValidationAOPEP
Huge Navigator AOPEP [HugePedia]
ClinGenAOPEP
Clinical trials, drugs, therapy
MyCancerGenomeAOPEP
Protein Interactions : CTD
Pharm GKB GenePA25978
PharosQ8N6M6
Clinical trialAOPEP
Miscellaneous
canSAR (ICR)AOPEP (select the gene name)
HarmonizomeAOPEP
DataMed IndexAOPEP
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAOPEP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:11:05 CET 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.