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AP1S1 (adaptor-related protein complex 1, sigma 1 subunit)

Identity

Other namesAP19
CLAPS1
MEDNIK
SIGMA1A
WUGSC:H_DJ0747G18.2
HGNC (Hugo) AP1S1
LocusID (NCBI) 1174
Location 7q22.1
Location_base_pair Starts at 100797686 and ends at 100804557 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AP1S1   559
Cards
Entrez_Gene (NCBI)AP1S1  1174  adaptor-related protein complex 1, sigma 1 subunit
GeneCards (Weizmann)AP1S1
Ensembl (Hinxton)ENSG00000106367 [Gene_View]  chr7:100797686-100804557 [Contig_View]  AP1S1 [Vega]
AceView (NCBI)AP1S1
Genatlas (Paris)AP1S1
WikiGenes1174
SOURCE (Princeton)NM_001283 NM_057089
Genomic and cartography
GoldenPath (UCSC)AP1S1  -  7q22.1   chr7:100797686-100804557 +  7q22.1   [Description]    (hg19-Feb_2009)
EnsemblAP1S1 - 7q22.1 [CytoView]
Mapping of homologs : NCBIAP1S1 [Mapview]
OMIM603531   609313   
Gene and transcription
Genbank (Entrez)AB015319 AK312151 BC003561 BI597121 BI598615
RefSeq transcript (Entrez)NM_001283 NM_057089
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_033082 NT_007933 NT_079596 NW_001839067 NW_004929332
Consensus coding sequences : CCDS (NCBI)AP1S1
Cluster EST : UnigeneHs.489365 [ NCBI ]
CGAP (NCI)Hs.489365
Alternative Splicing : Fast-db (Paris)GSHG0027599
Alternative Splicing GalleryENSG00000106367
Gene ExpressionAP1S1 [ NCBI-GEO ]     AP1S1 [ SEEK ]   AP1S1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61966 (Uniprot)
NextProtP61966  [Medical]
With graphics : InterProP61966
Splice isoforms : SwissVarP61966 (Swissvar)
Domaine pattern : Prosite (Expaxy)CLAT_ADAPTOR_S (PS00989)   
Domains : Interpro (EBI)AP_complex_ssu    AP_mu_sigma_su    Clathrin_sm-chain_CS    Longin-like_dom   
Related proteins : CluSTrP61966
Domain families : Pfam (Sanger)Clat_adaptor_s (PF01217)   
Domain families : Pfam (NCBI)pfam01217   
DMDM Disease mutations1174
Blocks (Seattle)P61966
Human Protein AtlasENSG00000106367
Peptide AtlasP61966
HPRD04635
IPIIPI00152898   IPI00100559   IPI00927531   
Protein Interaction databases
DIP (DOE-UCLA)P61966
IntAct (EBI)P61966
FunCoupENSG00000106367
BioGRIDAP1S1
InParanoidP61966
Interologous Interaction database P61966
IntegromeDBAP1S1
STRING (EMBL)AP1S1
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  lysosomal membrane  cytosol  coated pit  intracellular protein transport  post-Golgi vesicle-mediated transport  receptor-mediated endocytosis  protein transporter activity  response to virus  viral process  antigen processing and presentation of exogenous peptide antigen via MHC class II  AP-1 adaptor complex  clathrin coat of trans-Golgi network vesicle  cytoplasmic vesicle membrane  trans-Golgi network membrane  regulation of defense response to virus by virus  
Ontology : EGO-EBIGolgi membrane  lysosomal membrane  cytosol  coated pit  intracellular protein transport  post-Golgi vesicle-mediated transport  receptor-mediated endocytosis  protein transporter activity  response to virus  viral process  antigen processing and presentation of exogenous peptide antigen via MHC class II  AP-1 adaptor complex  clathrin coat of trans-Golgi network vesicle  cytoplasmic vesicle membrane  trans-Golgi network membrane  regulation of defense response to virus by virus  
Pathways : KEGGLysosome   
REACTOMEAP1S1
Protein Interaction DatabaseAP1S1
Wikipedia pathwaysAP1S1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AP1S1
SNP (GeneSNP Utah)AP1S1
SNP : HGBaseAP1S1
Genetic variants : HAPMAPAP1S1
1000_GenomesAP1S1 
ICGC programENSG00000106367 
Somatic Mutations in Cancer : COSMICAP1S1 
CONAN: Copy Number AnalysisAP1S1 
Mutations and Diseases : HGMDAP1S1
OMIM603531    609313   
GENETestsAP1S1
Disease Genetic AssociationAP1S1
Huge Navigator AP1S1 [HugePedia]  AP1S1 [HugeCancerGEM]
Genomic VariantsAP1S1  AP1S1 [DGVbeta]
Exome VariantAP1S1
dbVarAP1S1
ClinVarAP1S1
snp3D : Map Gene to Disease1174
General knowledge
Homologs : HomoloGeneAP1S1
Homology/Alignments : Family Browser (UCSC)AP1S1
Phylogenetic Trees/Animal Genes : TreeFamAP1S1
Chemical/Protein Interactions : CTD1174
Chemical/Pharm GKB GenePA24850
Clinical trialAP1S1
Cancer Resource (Charite)ENSG00000106367
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineAP1S1
iHOPAP1S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:03:42 CEST 2014

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