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AP3M2 (adaptor-related protein complex 3, mu 2 subunit)

Identity

Alias_namesadaptor-related protein complex 3, mu 2 subunit
Alias_symbol (synonym)CLA20
AP47B
Other aliasP47B
HGNC (Hugo) AP3M2
LocusID (NCBI) 10947
Atlas_Id 60405
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 42010464 and ends at 42028701 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AP3M2   570
Cards
Entrez_Gene (NCBI)AP3M2  10947  adaptor-related protein complex 3, mu 2 subunit
AliasesAP47B; CLA20; P47B
GeneCards (Weizmann)AP3M2
Ensembl hg19 (Hinxton)ENSG00000070718 [Gene_View]  chr8:42010464-42028701 [Contig_View]  AP3M2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000070718 [Gene_View]  chr8:42010464-42028701 [Contig_View]  AP3M2 [Vega]
ICGC DataPortalENSG00000070718
TCGA cBioPortalAP3M2
AceView (NCBI)AP3M2
Genatlas (Paris)AP3M2
WikiGenes10947
SOURCE (Princeton)AP3M2
Genetics Home Reference (NIH)AP3M2
Genomic and cartography
GoldenPath hg19 (UCSC)AP3M2  -     chr8:42010464-42028701 +  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AP3M2  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblAP3M2 - 8p11.21 [CytoView hg19]  AP3M2 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIAP3M2 [Mapview hg19]  AP3M2 [Mapview hg38]
OMIM610469   
Gene and transcription
Genbank (Entrez)AA854640 AK315228 BC021966 BC056257 BC056398
RefSeq transcript (Entrez)NM_001134296 NM_006803
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)AP3M2
Cluster EST : UnigeneHs.654529 [ NCBI ]
CGAP (NCI)Hs.654529
Alternative Splicing GalleryENSG00000070718
Gene ExpressionAP3M2 [ NCBI-GEO ]   AP3M2 [ EBI - ARRAY_EXPRESS ]   AP3M2 [ SEEK ]   AP3M2 [ MEM ]
Gene Expression Viewer (FireBrowse)AP3M2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10947
GTEX Portal (Tissue expression)AP3M2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53677   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53677  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53677
Splice isoforms : SwissVarP53677
PhosPhoSitePlusP53677
Domaine pattern : Prosite (Expaxy)CLAT_ADAPTOR_M_1 (PS00990)    CLAT_ADAPTOR_M_2 (PS00991)    MHD (PS51072)   
Domains : Interpro (EBI)AP_mu_sigma_su    Clathrin_mu    Clathrin_mu_C    Clathrin_mu_CS    Longin-like_dom    MHD   
Domain families : Pfam (Sanger)Adap_comp_sub (PF00928)    Clat_adaptor_s (PF01217)   
Domain families : Pfam (NCBI)pfam00928    pfam01217   
Conserved Domain (NCBI)AP3M2
DMDM Disease mutations10947
Blocks (Seattle)AP3M2
SuperfamilyP53677
Human Protein AtlasENSG00000070718
Peptide AtlasP53677
HPRD09801
IPIIPI00022883   IPI00973802   IPI00985074   IPI00982771   IPI01015053   IPI00974404   IPI00976784   IPI00980403   IPI01013252   IPI00983210   
Protein Interaction databases
DIP (DOE-UCLA)P53677
IntAct (EBI)P53677
FunCoupENSG00000070718
BioGRIDAP3M2
STRING (EMBL)AP3M2
ZODIACAP3M2
Ontologies - Pathways
QuickGOP53677
Ontology : AmiGOGolgi apparatus  intracellular protein transport  anterograde axon cargo transport  AP-type membrane coat adaptor complex  clathrin adaptor complex  cytoplasmic vesicle membrane  anterograde synaptic vesicle transport  
Ontology : EGO-EBIGolgi apparatus  intracellular protein transport  anterograde axon cargo transport  AP-type membrane coat adaptor complex  clathrin adaptor complex  cytoplasmic vesicle membrane  anterograde synaptic vesicle transport  
Pathways : KEGGLysosome   
NDEx NetworkAP3M2
Atlas of Cancer Signalling NetworkAP3M2
Wikipedia pathwaysAP3M2
Orthology - Evolution
OrthoDB10947
GeneTree (enSembl)ENSG00000070718
Phylogenetic Trees/Animal Genes : TreeFamAP3M2
HOVERGENP53677
HOGENOMP53677
Homologs : HomoloGeneAP3M2
Homology/Alignments : Family Browser (UCSC)AP3M2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAP3M2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AP3M2
dbVarAP3M2
ClinVarAP3M2
1000_GenomesAP3M2 
Exome Variant ServerAP3M2
ExAC (Exome Aggregation Consortium)AP3M2 (select the gene name)
Genetic variants : HAPMAP10947
Genomic Variants (DGV)AP3M2 [DGVbeta]
DECIPHER (Syndromes)8:42010464-42028701  ENSG00000070718
CONAN: Copy Number AnalysisAP3M2 
Mutations
ICGC Data PortalAP3M2 
TCGA Data PortalAP3M2 
Broad Tumor PortalAP3M2
OASIS PortalAP3M2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAP3M2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAP3M2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AP3M2
DgiDB (Drug Gene Interaction Database)AP3M2
DoCM (Curated mutations)AP3M2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AP3M2 (select a term)
intoGenAP3M2
Cancer3DAP3M2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610469   
Orphanet
MedgenAP3M2
Genetic Testing Registry AP3M2
NextProtP53677 [Medical]
TSGene10947
GENETestsAP3M2
Huge Navigator AP3M2 [HugePedia]
snp3D : Map Gene to Disease10947
BioCentury BCIQAP3M2
ClinGenAP3M2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10947
Chemical/Pharm GKB GenePA24861
Clinical trialAP3M2
Miscellaneous
canSAR (ICR)AP3M2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAP3M2
EVEXAP3M2
GoPubMedAP3M2
iHOPAP3M2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:39 CET 2017

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