Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AP5B1 (adaptor related protein complex 5 subunit beta 1)

Identity

Alias_namesadaptor-related protein complex 5, beta 1 subunit
Alias_symbol (synonym)PP1030
AP-5
DKFZp761E198
Other alias
HGNC (Hugo) AP5B1
LocusID (NCBI) 91056
Atlas_Id 60412
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65773898 and ends at 65780591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AP5B1   25104
Cards
Entrez_Gene (NCBI)AP5B1  91056  adaptor related protein complex 5 subunit beta 1
AliasesAP-5; PP1030
GeneCards (Weizmann)AP5B1
Ensembl hg19 (Hinxton)ENSG00000254470 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254470 [Gene_View]  ENSG00000254470 [Sequence]  chr11:65773898-65780591 [Contig_View]  AP5B1 [Vega]
ICGC DataPortalENSG00000254470
TCGA cBioPortalAP5B1
AceView (NCBI)AP5B1
Genatlas (Paris)AP5B1
WikiGenes91056
SOURCE (Princeton)AP5B1
Genetics Home Reference (NIH)AP5B1
Genomic and cartography
GoldenPath hg38 (UCSC)AP5B1  -     chr11:65773898-65780591 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AP5B1  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathAP5B1 - 11q13.1 [CytoView hg19]  AP5B1 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000254470
Mapping of homologs : NCBIAP5B1 [Mapview hg19]  AP5B1 [Mapview hg38]
OMIM614367   
Gene and transcription
Genbank (Entrez)AF193040 AL834269 BC004895 BC017264 BC109109
RefSeq transcript (Entrez)NM_138368
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AP5B1
Alternative Splicing GalleryENSG00000254470
Gene ExpressionAP5B1 [ NCBI-GEO ]   AP5B1 [ EBI - ARRAY_EXPRESS ]   AP5B1 [ SEEK ]   AP5B1 [ MEM ]
Gene Expression Viewer (FireBrowse)AP5B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91056
GTEX Portal (Tissue expression)AP5B1
Human Protein AtlasENSG00000254470-AP5B1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2VPB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2VPB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2VPB7
Splice isoforms : SwissVarQ2VPB7
PhosPhoSitePlusQ2VPB7
Domains : Interpro (EBI)AP5B1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AP5B1
DMDM Disease mutations91056
Blocks (Seattle)AP5B1
SuperfamilyQ2VPB7
Human Protein Atlas [tissue]ENSG00000254470-AP5B1 [tissue]
Peptide AtlasQ2VPB7
HPRD13223
IPIIPI00386243   
Protein Interaction databases
DIP (DOE-UCLA)Q2VPB7
IntAct (EBI)Q2VPB7
FunCoupENSG00000254470
BioGRIDAP5B1
STRING (EMBL)AP5B1
ZODIACAP5B1
Ontologies - Pathways
QuickGOQ2VPB7
Ontology : AmiGOprotein binding  lysosomal membrane  protein transport  endosomal transport  endosomal transport  AP-type membrane coat adaptor complex  AP-type membrane coat adaptor complex  
Ontology : EGO-EBIprotein binding  lysosomal membrane  protein transport  endosomal transport  endosomal transport  AP-type membrane coat adaptor complex  AP-type membrane coat adaptor complex  
NDEx NetworkAP5B1
Atlas of Cancer Signalling NetworkAP5B1
Wikipedia pathwaysAP5B1
Orthology - Evolution
OrthoDB91056
GeneTree (enSembl)ENSG00000254470
Phylogenetic Trees/Animal Genes : TreeFamAP5B1
HOGENOMQ2VPB7
Homologs : HomoloGeneAP5B1
Homology/Alignments : Family Browser (UCSC)AP5B1
Gene fusions - Rearrangements
Fusion : QuiverAP5B1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAP5B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AP5B1
dbVarAP5B1
ClinVarAP5B1
1000_GenomesAP5B1 
Exome Variant ServerAP5B1
ExAC (Exome Aggregation Consortium)ENSG00000254470
GNOMAD BrowserENSG00000254470
Varsome BrowserAP5B1
Genetic variants : HAPMAP91056
Genomic Variants (DGV)AP5B1 [DGVbeta]
DECIPHERAP5B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAP5B1 
Mutations
ICGC Data PortalAP5B1 
TCGA Data PortalAP5B1 
Broad Tumor PortalAP5B1
OASIS PortalAP5B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAP5B1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAP5B1
Mutations and Diseases : HGMDAP5B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AP5B1
DgiDB (Drug Gene Interaction Database)AP5B1
DoCM (Curated mutations)AP5B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AP5B1 (select a term)
intoGenAP5B1
Cancer3DAP5B1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614367   
Orphanet
DisGeNETAP5B1
MedgenAP5B1
Genetic Testing Registry AP5B1
NextProtQ2VPB7 [Medical]
TSGene91056
GENETestsAP5B1
Target ValidationAP5B1
Huge Navigator AP5B1 [HugePedia]
snp3D : Map Gene to Disease91056
BioCentury BCIQAP5B1
ClinGenAP5B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91056
Chemical/Pharm GKB GenePA166048967
Clinical trialAP5B1
Miscellaneous
canSAR (ICR)AP5B1 (select the gene name)
HarmonizomeAP5B1
DataMed IndexAP5B1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAP5B1
EVEXAP5B1
GoPubMedAP5B1
iHOPAP5B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun May 10 11:24:59 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.