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AP5M1 (adaptor-related protein complex 5, mu 1 subunit)

Identity

Alias_namesC14orf108
MUDENG
chromosome 14 open reading frame 108
MU-2/AP1M2 domain containing, death-inducing
adaptor-related protein complex 5, mu 1 subunit
Alias_symbol (synonym)FLJ10813
MuD
mu5
Other aliasMu5
HGNC (Hugo) AP5M1
LocusID (NCBI) 55745
Atlas_Id 60413
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 57735606 and ends at 57756797 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP5M1 (14q22.3) / SPINK1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AP5M1   20192
Cards
Entrez_Gene (NCBI)AP5M1  55745  adaptor-related protein complex 5, mu 1 subunit
AliasesC14orf108; MUDENG; Mu5; MuD
GeneCards (Weizmann)AP5M1
Ensembl hg19 (Hinxton)ENSG00000053770 [Gene_View]  chr14:57735606-57756797 [Contig_View]  AP5M1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000053770 [Gene_View]  chr14:57735606-57756797 [Contig_View]  AP5M1 [Vega]
ICGC DataPortalENSG00000053770
TCGA cBioPortalAP5M1
AceView (NCBI)AP5M1
Genatlas (Paris)AP5M1
WikiGenes55745
SOURCE (Princeton)AP5M1
Genetics Home Reference (NIH)AP5M1
Genomic and cartography
GoldenPath hg19 (UCSC)AP5M1  -     chr14:57735606-57756797 +  14q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AP5M1  -     14q22.3   [Description]    (hg38-Dec_2013)
EnsemblAP5M1 - 14q22.3 [CytoView hg19]  AP5M1 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBIAP5M1 [Mapview hg19]  AP5M1 [Mapview hg38]
OMIM614368   
Gene and transcription
Genbank (Entrez)AF094583 AK001675 AK024921 AK172824 AK225345
RefSeq transcript (Entrez)NM_018229
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)AP5M1
Cluster EST : UnigeneHs.720252 [ NCBI ]
CGAP (NCI)Hs.720252
Alternative Splicing GalleryENSG00000053770
Gene ExpressionAP5M1 [ NCBI-GEO ]   AP5M1 [ EBI - ARRAY_EXPRESS ]   AP5M1 [ SEEK ]   AP5M1 [ MEM ]
Gene Expression Viewer (FireBrowse)AP5M1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55745
GTEX Portal (Tissue expression)AP5M1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0R1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0R1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0R1
Splice isoforms : SwissVarQ9H0R1
PhosPhoSitePlusQ9H0R1
Domaine pattern : Prosite (Expaxy)MHD (PS51072)   
Domains : Interpro (EBI)Clathrin_mu_C    MHD   
Domain families : Pfam (Sanger)Adap_comp_sub (PF00928)   
Domain families : Pfam (NCBI)pfam00928   
Conserved Domain (NCBI)AP5M1
DMDM Disease mutations55745
Blocks (Seattle)AP5M1
SuperfamilyQ9H0R1
Human Protein AtlasENSG00000053770
Peptide AtlasQ9H0R1
HPRD12630
IPIIPI00942480   IPI00061266   IPI00152947   IPI01025613   IPI01025739   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0R1
IntAct (EBI)Q9H0R1
FunCoupENSG00000053770
BioGRIDAP5M1
STRING (EMBL)AP5M1
ZODIACAP5M1
Ontologies - Pathways
QuickGOQ9H0R1
Ontology : AmiGOlysosome  lysosomal membrane  late endosome  cytosol  intracellular protein transport  membrane  vesicle-mediated transport  endosomal transport  AP-type membrane coat adaptor complex  clathrin adaptor complex  late endosome membrane  
Ontology : EGO-EBIlysosome  lysosomal membrane  late endosome  cytosol  intracellular protein transport  membrane  vesicle-mediated transport  endosomal transport  AP-type membrane coat adaptor complex  clathrin adaptor complex  late endosome membrane  
NDEx NetworkAP5M1
Atlas of Cancer Signalling NetworkAP5M1
Wikipedia pathwaysAP5M1
Orthology - Evolution
OrthoDB55745
GeneTree (enSembl)ENSG00000053770
Phylogenetic Trees/Animal Genes : TreeFamAP5M1
HOVERGENQ9H0R1
HOGENOMQ9H0R1
Homologs : HomoloGeneAP5M1
Homology/Alignments : Family Browser (UCSC)AP5M1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAP5M1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AP5M1
dbVarAP5M1
ClinVarAP5M1
1000_GenomesAP5M1 
Exome Variant ServerAP5M1
ExAC (Exome Aggregation Consortium)AP5M1 (select the gene name)
Genetic variants : HAPMAP55745
Genomic Variants (DGV)AP5M1 [DGVbeta]
DECIPHER (Syndromes)14:57735606-57756797  ENSG00000053770
CONAN: Copy Number AnalysisAP5M1 
Mutations
ICGC Data PortalAP5M1 
TCGA Data PortalAP5M1 
Broad Tumor PortalAP5M1
OASIS PortalAP5M1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAP5M1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AP5M1
DgiDB (Drug Gene Interaction Database)AP5M1
DoCM (Curated mutations)AP5M1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AP5M1 (select a term)
intoGenAP5M1
Cancer3DAP5M1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614368   
Orphanet
MedgenAP5M1
Genetic Testing Registry AP5M1
NextProtQ9H0R1 [Medical]
TSGene55745
GENETestsAP5M1
Huge Navigator AP5M1 [HugePedia]
snp3D : Map Gene to Disease55745
BioCentury BCIQAP5M1
ClinGenAP5M1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55745
Chemical/Pharm GKB GenePA164723216
Clinical trialAP5M1
Miscellaneous
canSAR (ICR)AP5M1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAP5M1
EVEXAP5M1
GoPubMedAP5M1
iHOPAP5M1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:41 CET 2017

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