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APCDD1 (APC down-regulated 1)

Identity

Alias_namesadenomatosis polyposis coli down-regulated 1
Alias_symbol (synonym)B7323
Other aliasDRAPC1
FP7019
HHS
HTS
HYPT1
HGNC (Hugo) APCDD1
LocusID (NCBI) 147495
Atlas_Id 667
Location 18p11.22  [Link to chromosome band 18p11]
Location_base_pair Starts at 10454628 and ends at 10488701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APCDD1 (18p11.22) / TRAPPC8 (18q12.1)APCDD1 18p11.22 / TRAPPC8 18q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APCDD1   15718
Cards
Entrez_Gene (NCBI)APCDD1  147495  APC down-regulated 1
AliasesB7323; DRAPC1; FP7019; HHS; 
HTS; HYPT1
GeneCards (Weizmann)APCDD1
Ensembl hg19 (Hinxton)ENSG00000154856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154856 [Gene_View]  chr18:10454628-10488701 [Contig_View]  APCDD1 [Vega]
ICGC DataPortalENSG00000154856
TCGA cBioPortalAPCDD1
AceView (NCBI)APCDD1
Genatlas (Paris)APCDD1
WikiGenes147495
SOURCE (Princeton)APCDD1
Genetics Home Reference (NIH)APCDD1
Genomic and cartography
GoldenPath hg38 (UCSC)APCDD1  -     chr18:10454628-10488701 +  18p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APCDD1  -     18p11.22   [Description]    (hg19-Feb_2009)
EnsemblAPCDD1 - 18p11.22 [CytoView hg19]  APCDD1 - 18p11.22 [CytoView hg38]
Mapping of homologs : NCBIAPCDD1 [Mapview hg19]  APCDD1 [Mapview hg38]
OMIM605389   607479   
Gene and transcription
Genbank (Entrez)AB056722 AB104887 AF461902 AK300743 AK303076
RefSeq transcript (Entrez)NM_153000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APCDD1
Cluster EST : UnigeneHs.293274 [ NCBI ]
CGAP (NCI)Hs.293274
Alternative Splicing GalleryENSG00000154856
Gene ExpressionAPCDD1 [ NCBI-GEO ]   APCDD1 [ EBI - ARRAY_EXPRESS ]   APCDD1 [ SEEK ]   APCDD1 [ MEM ]
Gene Expression Viewer (FireBrowse)APCDD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147495
GTEX Portal (Tissue expression)APCDD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8J025   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8J025  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8J025
Splice isoforms : SwissVarQ8J025
PhosPhoSitePlusQ8J025
Domains : Interpro (EBI)APCDD1   
Domain families : Pfam (Sanger)APCDDC (PF14921)   
Domain families : Pfam (NCBI)pfam14921   
Domain families : Smart (EMBL)APCDDC (SM01352)  
Conserved Domain (NCBI)APCDD1
DMDM Disease mutations147495
Blocks (Seattle)APCDD1
SuperfamilyQ8J025
Human Protein AtlasENSG00000154856
Peptide AtlasQ8J025
HPRD09595
IPIIPI00939369   IPI00216332   
Protein Interaction databases
DIP (DOE-UCLA)Q8J025
IntAct (EBI)Q8J025
FunCoupENSG00000154856
BioGRIDAPCDD1
STRING (EMBL)APCDD1
ZODIACAPCDD1
Ontologies - Pathways
QuickGOQ8J025
Ontology : AmiGOhair follicle development  integral component of plasma membrane  Wnt signaling pathway  Wnt-protein binding  negative regulation of Wnt signaling pathway  astrocyte cell migration  
Ontology : EGO-EBIhair follicle development  integral component of plasma membrane  Wnt signaling pathway  Wnt-protein binding  negative regulation of Wnt signaling pathway  astrocyte cell migration  
NDEx NetworkAPCDD1
Atlas of Cancer Signalling NetworkAPCDD1
Wikipedia pathwaysAPCDD1
Orthology - Evolution
OrthoDB147495
GeneTree (enSembl)ENSG00000154856
Phylogenetic Trees/Animal Genes : TreeFamAPCDD1
HOVERGENQ8J025
HOGENOMQ8J025
Homologs : HomoloGeneAPCDD1
Homology/Alignments : Family Browser (UCSC)APCDD1
Gene fusions - Rearrangements
Fusion : MitelmanAPCDD1/TRAPPC8 [18p11.22/18q12.1]  
Fusion: TCGAAPCDD1 18p11.22 TRAPPC8 18q12.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPCDD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APCDD1
dbVarAPCDD1
ClinVarAPCDD1
1000_GenomesAPCDD1 
Exome Variant ServerAPCDD1
ExAC (Exome Aggregation Consortium)APCDD1 (select the gene name)
Genetic variants : HAPMAP147495
Genomic Variants (DGV)APCDD1 [DGVbeta]
DECIPHERAPCDD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPCDD1 
Mutations
ICGC Data PortalAPCDD1 
TCGA Data PortalAPCDD1 
Broad Tumor PortalAPCDD1
OASIS PortalAPCDD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPCDD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPCDD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APCDD1
DgiDB (Drug Gene Interaction Database)APCDD1
DoCM (Curated mutations)APCDD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APCDD1 (select a term)
intoGenAPCDD1
Cancer3DAPCDD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605389    607479   
Orphanet10760   
MedgenAPCDD1
Genetic Testing Registry APCDD1
NextProtQ8J025 [Medical]
TSGene147495
GENETestsAPCDD1
Huge Navigator APCDD1 [HugePedia]
snp3D : Map Gene to Disease147495
BioCentury BCIQAPCDD1
ClinGenAPCDD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147495
Chemical/Pharm GKB GenePA24876
Clinical trialAPCDD1
Miscellaneous
canSAR (ICR)APCDD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPCDD1
EVEXAPCDD1
GoPubMedAPCDD1
iHOPAPCDD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:13 CEST 2017

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