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APCDD1L (adenomatosis polyposis coli down-regulated 1 like)

Identity

Alias_namesadenomatosis polyposis coli down-regulated 1-like
Alias_symbol (synonym)FLJ90166
Other alias-
HGNC (Hugo) APCDD1L
LocusID (NCBI) 164284
Atlas_Id 53957
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 57034160 and ends at 57089994 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APCDD1L   26892
Cards
Entrez_Gene (NCBI)APCDD1L  164284  adenomatosis polyposis coli down-regulated 1 like
Aliases
GeneCards (Weizmann)APCDD1L
Ensembl hg19 (Hinxton)ENSG00000198768 [Gene_View]  chr20:57034160-57089994 [Contig_View]  APCDD1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000198768 [Gene_View]  chr20:57034160-57089994 [Contig_View]  APCDD1L [Vega]
ICGC DataPortalENSG00000198768
TCGA cBioPortalAPCDD1L
AceView (NCBI)APCDD1L
Genatlas (Paris)APCDD1L
WikiGenes164284
SOURCE (Princeton)APCDD1L
Genetics Home Reference (NIH)APCDD1L
Genomic and cartography
GoldenPath hg19 (UCSC)APCDD1L  -     chr20:57034160-57089994 -  20q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)APCDD1L  -     20q13.32   [Description]    (hg38-Dec_2013)
EnsemblAPCDD1L - 20q13.32 [CytoView hg19]  APCDD1L - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBIAPCDD1L [Mapview hg19]  APCDD1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074647 AK293299 BC101758 BC101760 BQ018966
RefSeq transcript (Entrez)NM_001304787 NM_153360
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)APCDD1L
Cluster EST : UnigeneHs.119286 [ NCBI ]
CGAP (NCI)Hs.119286
Alternative Splicing GalleryENSG00000198768
Gene ExpressionAPCDD1L [ NCBI-GEO ]   APCDD1L [ EBI - ARRAY_EXPRESS ]   APCDD1L [ SEEK ]   APCDD1L [ MEM ]
Gene Expression Viewer (FireBrowse)APCDD1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164284
GTEX Portal (Tissue expression)APCDD1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCL9
Splice isoforms : SwissVarQ8NCL9
PhosPhoSitePlusQ8NCL9
Domains : Interpro (EBI)APCDD1   
Domain families : Pfam (Sanger)APCDDC (PF14921)   
Domain families : Pfam (NCBI)pfam14921   
Conserved Domain (NCBI)APCDD1L
DMDM Disease mutations164284
Blocks (Seattle)APCDD1L
SuperfamilyQ8NCL9
Human Protein AtlasENSG00000198768
Peptide AtlasQ8NCL9
HPRD08294
IPIIPI01010142   IPI00414128   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCL9
IntAct (EBI)Q8NCL9
FunCoupENSG00000198768
BioGRIDAPCDD1L
STRING (EMBL)APCDD1L
ZODIACAPCDD1L
Ontologies - Pathways
QuickGOQ8NCL9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkAPCDD1L
Atlas of Cancer Signalling NetworkAPCDD1L
Wikipedia pathwaysAPCDD1L
Orthology - Evolution
OrthoDB164284
GeneTree (enSembl)ENSG00000198768
Phylogenetic Trees/Animal Genes : TreeFamAPCDD1L
HOVERGENQ8NCL9
HOGENOMQ8NCL9
Homologs : HomoloGeneAPCDD1L
Homology/Alignments : Family Browser (UCSC)APCDD1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPCDD1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APCDD1L
dbVarAPCDD1L
ClinVarAPCDD1L
1000_GenomesAPCDD1L 
Exome Variant ServerAPCDD1L
ExAC (Exome Aggregation Consortium)APCDD1L (select the gene name)
Genetic variants : HAPMAP164284
Genomic Variants (DGV)APCDD1L [DGVbeta]
DECIPHER (Syndromes)20:57034160-57089994  ENSG00000198768
CONAN: Copy Number AnalysisAPCDD1L 
Mutations
ICGC Data PortalAPCDD1L 
TCGA Data PortalAPCDD1L 
Broad Tumor PortalAPCDD1L
OASIS PortalAPCDD1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPCDD1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPCDD1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APCDD1L
DgiDB (Drug Gene Interaction Database)APCDD1L
DoCM (Curated mutations)APCDD1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APCDD1L (select a term)
intoGenAPCDD1L
Cancer3DAPCDD1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAPCDD1L
Genetic Testing Registry APCDD1L
NextProtQ8NCL9 [Medical]
TSGene164284
GENETestsAPCDD1L
Huge Navigator APCDD1L [HugePedia]
snp3D : Map Gene to Disease164284
BioCentury BCIQAPCDD1L
ClinGenAPCDD1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164284
Chemical/Pharm GKB GenePA145149831
Clinical trialAPCDD1L
Miscellaneous
canSAR (ICR)APCDD1L (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPCDD1L
EVEXAPCDD1L
GoPubMedAPCDD1L
iHOPAPCDD1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:52:36 CEST 2017

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