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APMAP (adipocyte plasma membrane associated protein)

Identity

Alias_namesC20orf3
chromosome 20 open reading frame 3
Alias_symbol (synonym)BSCv
Other alias
HGNC (Hugo) APMAP
LocusID (NCBI) 57136
Atlas_Id 53206
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 24962944 and ends at 24992789 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACSS1 (20p11.21) / APMAP (20p11.21)APMAP (20p11.21) / ZNF337 (20p11.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APMAP   13238
Cards
Entrez_Gene (NCBI)APMAP  57136  adipocyte plasma membrane associated protein
AliasesBSCv; C20orf3
GeneCards (Weizmann)APMAP
Ensembl hg19 (Hinxton)ENSG00000101474 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101474 [Gene_View]  chr20:24962944-24992789 [Contig_View]  APMAP [Vega]
ICGC DataPortalENSG00000101474
TCGA cBioPortalAPMAP
AceView (NCBI)APMAP
Genatlas (Paris)APMAP
WikiGenes57136
SOURCE (Princeton)APMAP
Genetics Home Reference (NIH)APMAP
Genomic and cartography
GoldenPath hg38 (UCSC)APMAP  -     chr20:24962944-24992789 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APMAP  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblAPMAP - 20p11.21 [CytoView hg19]  APMAP - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBIAPMAP [Mapview hg19]  APMAP [Mapview hg38]
OMIM615884   
Gene and transcription
Genbank (Entrez)AB033767 AK025834 AK026866 AK291129 AK301959
RefSeq transcript (Entrez)NM_020531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APMAP
Cluster EST : UnigeneHs.472330 [ NCBI ]
CGAP (NCI)Hs.472330
Alternative Splicing GalleryENSG00000101474
Gene ExpressionAPMAP [ NCBI-GEO ]   APMAP [ EBI - ARRAY_EXPRESS ]   APMAP [ SEEK ]   APMAP [ MEM ]
Gene Expression Viewer (FireBrowse)APMAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57136
GTEX Portal (Tissue expression)APMAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HDC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HDC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HDC9
Splice isoforms : SwissVarQ9HDC9
PhosPhoSitePlusQ9HDC9
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Strictosidine_synth_cons-reg    Strictosidine_synthase   
Domain families : Pfam (Sanger)Str_synth (PF03088)   
Domain families : Pfam (NCBI)pfam03088   
Conserved Domain (NCBI)APMAP
DMDM Disease mutations57136
Blocks (Seattle)APMAP
SuperfamilyQ9HDC9
Human Protein AtlasENSG00000101474
Peptide AtlasQ9HDC9
HPRD09840
IPIIPI00031131   IPI00929530   IPI00791304   
Protein Interaction databases
DIP (DOE-UCLA)Q9HDC9
IntAct (EBI)Q9HDC9
FunCoupENSG00000101474
BioGRIDAPMAP
STRING (EMBL)APMAP
ZODIACAPMAP
Ontologies - Pathways
QuickGOQ9HDC9
Ontology : AmiGOarylesterase activity  endoplasmic reticulum  biological_process  biosynthetic process  cell surface  membrane  integral component of membrane  strictosidine synthase activity  extracellular exosome  
Ontology : EGO-EBIarylesterase activity  endoplasmic reticulum  biological_process  biosynthetic process  cell surface  membrane  integral component of membrane  strictosidine synthase activity  extracellular exosome  
NDEx NetworkAPMAP
Atlas of Cancer Signalling NetworkAPMAP
Wikipedia pathwaysAPMAP
Orthology - Evolution
OrthoDB57136
GeneTree (enSembl)ENSG00000101474
Phylogenetic Trees/Animal Genes : TreeFamAPMAP
HOVERGENQ9HDC9
HOGENOMQ9HDC9
Homologs : HomoloGeneAPMAP
Homology/Alignments : Family Browser (UCSC)APMAP
Gene fusions - Rearrangements
Fusion : MitelmanAPMAP/ZNF337 [20p11.21/20p11.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPMAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APMAP
dbVarAPMAP
ClinVarAPMAP
1000_GenomesAPMAP 
Exome Variant ServerAPMAP
ExAC (Exome Aggregation Consortium)APMAP (select the gene name)
Genetic variants : HAPMAP57136
Genomic Variants (DGV)APMAP [DGVbeta]
DECIPHERAPMAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPMAP 
Mutations
ICGC Data PortalAPMAP 
TCGA Data PortalAPMAP 
Broad Tumor PortalAPMAP
OASIS PortalAPMAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPMAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPMAP
BioMutasearch APMAP
DgiDB (Drug Gene Interaction Database)APMAP
DoCM (Curated mutations)APMAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APMAP (select a term)
intoGenAPMAP
Cancer3DAPMAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615884   
Orphanet
MedgenAPMAP
Genetic Testing Registry APMAP
NextProtQ9HDC9 [Medical]
TSGene57136
GENETestsAPMAP
Huge Navigator APMAP [HugePedia]
snp3D : Map Gene to Disease57136
BioCentury BCIQAPMAP
ClinGenAPMAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57136
Chemical/Pharm GKB GenePA25745
Clinical trialAPMAP
Miscellaneous
canSAR (ICR)APMAP (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPMAP
EVEXAPMAP
GoPubMedAPMAP
iHOPAPMAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:16 CEST 2017

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