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APOA1BP (apolipoprotein A-I binding protein)

Identity

Other aliasAIBP
YJEFN1
HGNC (Hugo) APOA1BP
LocusID (NCBI) 128240
Atlas_Id 60423
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156561558 and ends at 156564091 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
APOA1BP (1q23.1) / ARMC1 (8q13.1)APOA1BP (1q23.1) / DSP (6p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOA1BP   18453
Cards
Entrez_Gene (NCBI)APOA1BP  128240  apolipoprotein A-I binding protein
AliasesAIBP; YJEFN1
GeneCards (Weizmann)APOA1BP
Ensembl hg19 (Hinxton)ENSG00000163382 [Gene_View]  chr1:156561558-156564091 [Contig_View]  APOA1BP [Vega]
Ensembl hg38 (Hinxton)ENSG00000163382 [Gene_View]  chr1:156561558-156564091 [Contig_View]  APOA1BP [Vega]
ICGC DataPortalENSG00000163382
TCGA cBioPortalAPOA1BP
AceView (NCBI)APOA1BP
Genatlas (Paris)APOA1BP
WikiGenes128240
SOURCE (Princeton)APOA1BP
Genetics Home Reference (NIH)APOA1BP
Genomic and cartography
GoldenPath hg19 (UCSC)APOA1BP  -     chr1:156561558-156564091 +  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)APOA1BP  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblAPOA1BP - 1q23.1 [CytoView hg19]  APOA1BP - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIAPOA1BP [Mapview hg19]  APOA1BP [Mapview hg38]
OMIM608862   
Gene and transcription
Genbank (Entrez)AJ315849 AK294835 AK298222 AK316083 BC056917
RefSeq transcript (Entrez)NM_144772
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)APOA1BP
Cluster EST : UnigeneHs.528320 [ NCBI ]
CGAP (NCI)Hs.528320
Alternative Splicing GalleryENSG00000163382
Gene ExpressionAPOA1BP [ NCBI-GEO ]   APOA1BP [ EBI - ARRAY_EXPRESS ]   APOA1BP [ SEEK ]   APOA1BP [ MEM ]
Gene Expression Viewer (FireBrowse)APOA1BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128240
GTEX Portal (Tissue expression)APOA1BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCW5
Splice isoforms : SwissVarQ8NCW5
Catalytic activity : Enzyme5.1.99.6 [ Enzyme-Expasy ]   5.1.99.65.1.99.6 [ IntEnz-EBI ]   5.1.99.6 [ BRENDA ]   5.1.99.6 [ KEGG ]   
PhosPhoSitePlusQ8NCW5
Domaine pattern : Prosite (Expaxy)YJEF_N (PS51385)   
Domains : Interpro (EBI)YjeF_N_dom   
Domain families : Pfam (Sanger)YjeF_N (PF03853)   
Domain families : Pfam (NCBI)pfam03853   
Conserved Domain (NCBI)APOA1BP
DMDM Disease mutations128240
Blocks (Seattle)APOA1BP
SuperfamilyQ8NCW5
Human Protein AtlasENSG00000163382
Peptide AtlasQ8NCW5
HPRD16397
IPIIPI00941988   IPI00848298   IPI00168479   IPI00448169   IPI00514157   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCW5
IntAct (EBI)Q8NCW5
FunCoupENSG00000163382
BioGRIDAPOA1BP
STRING (EMBL)APOA1BP
ZODIACAPOA1BP
Ontologies - Pathways
QuickGOQ8NCW5
Ontology : AmiGOnucleotide binding  protein binding  extracellular region  extracellular space  nucleoplasm  cytoplasm  mitochondrion  cilium  NADH metabolic process  NADP metabolic process  biological_process  protein homodimerization activity  intracellular membrane-bounded organelle  cell body  metal ion binding  protein homotetramerization  NADHX epimerase activity  NADPHX epimerase activity  extracellular exosome  
Ontology : EGO-EBInucleotide binding  protein binding  extracellular region  extracellular space  nucleoplasm  cytoplasm  mitochondrion  cilium  NADH metabolic process  NADP metabolic process  biological_process  protein homodimerization activity  intracellular membrane-bounded organelle  cell body  metal ion binding  protein homotetramerization  NADHX epimerase activity  NADPHX epimerase activity  extracellular exosome  
NDEx NetworkAPOA1BP
Atlas of Cancer Signalling NetworkAPOA1BP
Wikipedia pathwaysAPOA1BP
Orthology - Evolution
OrthoDB128240
GeneTree (enSembl)ENSG00000163382
Phylogenetic Trees/Animal Genes : TreeFamAPOA1BP
HOVERGENQ8NCW5
HOGENOMQ8NCW5
Homologs : HomoloGeneAPOA1BP
Homology/Alignments : Family Browser (UCSC)APOA1BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOA1BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOA1BP
dbVarAPOA1BP
ClinVarAPOA1BP
1000_GenomesAPOA1BP 
Exome Variant ServerAPOA1BP
ExAC (Exome Aggregation Consortium)APOA1BP (select the gene name)
Genetic variants : HAPMAP128240
Genomic Variants (DGV)APOA1BP [DGVbeta]
DECIPHER (Syndromes)1:156561558-156564091  ENSG00000163382
CONAN: Copy Number AnalysisAPOA1BP 
Mutations
ICGC Data PortalAPOA1BP 
TCGA Data PortalAPOA1BP 
Broad Tumor PortalAPOA1BP
OASIS PortalAPOA1BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOA1BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOA1BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch APOA1BP
DgiDB (Drug Gene Interaction Database)APOA1BP
DoCM (Curated mutations)APOA1BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOA1BP (select a term)
intoGenAPOA1BP
Cancer3DAPOA1BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608862   
Orphanet
MedgenAPOA1BP
Genetic Testing Registry APOA1BP
NextProtQ8NCW5 [Medical]
TSGene128240
GENETestsAPOA1BP
Huge Navigator APOA1BP [HugePedia]
snp3D : Map Gene to Disease128240
BioCentury BCIQAPOA1BP
ClinGenAPOA1BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128240
Chemical/Pharm GKB GenePA38538
Clinical trialAPOA1BP
Miscellaneous
canSAR (ICR)APOA1BP (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOA1BP
EVEXAPOA1BP
GoPubMedAPOA1BP
iHOPAPOA1BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:43 CET 2017

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