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APOA5 (apolipoprotein A5)

Identity

Alias_namesapolipoprotein A-V
Alias_symbol (synonym)RAP3
APOA-V
Other aliasAPOAV
HGNC (Hugo) APOA5
LocusID (NCBI) 116519
Atlas_Id 60424
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 116789370 and ends at 116792420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BUD13 (11q23.3) / APOA5 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q23;q23) BUD13/APOA5

External links

Nomenclature
HGNC (Hugo)APOA5   17288
Cards
Entrez_Gene (NCBI)APOA5  116519  apolipoprotein A5
AliasesAPOAV; RAP3
GeneCards (Weizmann)APOA5
Ensembl hg19 (Hinxton)ENSG00000110243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110243 [Gene_View]  ENSG00000110243 [Sequence]  chr11:116789370-116792420 [Contig_View]  APOA5 [Vega]
ICGC DataPortalENSG00000110243
TCGA cBioPortalAPOA5
AceView (NCBI)APOA5
Genatlas (Paris)APOA5
WikiGenes116519
SOURCE (Princeton)APOA5
Genetics Home Reference (NIH)APOA5
Genomic and cartography
GoldenPath hg38 (UCSC)APOA5  -     chr11:116789370-116792420 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOA5  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblAPOA5 - 11q23.3 [CytoView hg19]  APOA5 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIAPOA5 [Mapview hg19]  APOA5 [Mapview hg38]
OMIM144650   145750   606368   
Gene and transcription
Genbank (Entrez)AF202889 AF202890 AK292739 AK308047 AK315229
RefSeq transcript (Entrez)NM_001166598 NM_052968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOA5
Cluster EST : UnigeneHs.283923 [ NCBI ]
CGAP (NCI)Hs.283923
Alternative Splicing GalleryENSG00000110243
Gene ExpressionAPOA5 [ NCBI-GEO ]   APOA5 [ EBI - ARRAY_EXPRESS ]   APOA5 [ SEEK ]   APOA5 [ MEM ]
Gene Expression Viewer (FireBrowse)APOA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116519
GTEX Portal (Tissue expression)APOA5
Human Protein AtlasENSG00000110243-APOA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q788   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q788  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q788
Splice isoforms : SwissVarQ6Q788
PhosPhoSitePlusQ6Q788
Domains : Interpro (EBI)ApoA_E   
Domain families : Pfam (Sanger)Apolipoprotein (PF01442)   
Domain families : Pfam (NCBI)pfam01442   
Conserved Domain (NCBI)APOA5
DMDM Disease mutations116519
Blocks (Seattle)APOA5
SuperfamilyQ6Q788
Human Protein Atlas [tissue]ENSG00000110243-APOA5 [tissue]
Peptide AtlasQ6Q788
HPRD06966
IPIIPI00465378   IPI00657743   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q788
IntAct (EBI)Q6Q788
FunCoupENSG00000110243
BioGRIDAPOA5
STRING (EMBL)APOA5
ZODIACAPOA5
Ontologies - Pathways
QuickGOQ6Q788
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkAPOA5
Atlas of Cancer Signalling NetworkAPOA5
Wikipedia pathwaysAPOA5
Orthology - Evolution
OrthoDB116519
GeneTree (enSembl)ENSG00000110243
Phylogenetic Trees/Animal Genes : TreeFamAPOA5
HOVERGENQ6Q788
HOGENOMQ6Q788
Homologs : HomoloGeneAPOA5
Homology/Alignments : Family Browser (UCSC)APOA5
Gene fusions - Rearrangements
Fusion : QuiverAPOA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOA5
dbVarAPOA5
ClinVarAPOA5
1000_GenomesAPOA5 
Exome Variant ServerAPOA5
ExAC (Exome Aggregation Consortium)ENSG00000110243
GNOMAD BrowserENSG00000110243
Varsome BrowserAPOA5
Genetic variants : HAPMAP116519
Genomic Variants (DGV)APOA5 [DGVbeta]
DECIPHERAPOA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOA5 
Mutations
ICGC Data PortalAPOA5 
TCGA Data PortalAPOA5 
Broad Tumor PortalAPOA5
OASIS PortalAPOA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOA5
DgiDB (Drug Gene Interaction Database)APOA5
DoCM (Curated mutations)APOA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOA5 (select a term)
intoGenAPOA5
Cancer3DAPOA5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM144650    145750    606368   
Orphanet10944   
DisGeNETAPOA5
MedgenAPOA5
Genetic Testing Registry APOA5
NextProtQ6Q788 [Medical]
TSGene116519
GENETestsAPOA5
Target ValidationAPOA5
Huge Navigator APOA5 [HugePedia]
snp3D : Map Gene to Disease116519
BioCentury BCIQAPOA5
ClinGenAPOA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116519
Chemical/Pharm GKB GenePA24888
Clinical trialAPOA5
Miscellaneous
canSAR (ICR)APOA5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOA5
EVEXAPOA5
GoPubMedAPOA5
iHOPAPOA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:35:43 CEST 2018
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