Atlas of Genetics and Cytogenetics in Oncology and Haematology


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APOBEC3D (apolipoprotein B mRNA editing enzyme catalytic subunit 3D)

Identity

Alias_namesAPOBEC3E
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D (putative)
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3E pseudogene
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D
Alias_symbol (synonym)ARP6
APOBEC3DE
Other aliasA3D
HGNC (Hugo) APOBEC3D
LocusID (NCBI) 140564
Atlas_Id 60427
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39021113 and ends at 39033251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOBEC3D   17354
Cards
Entrez_Gene (NCBI)APOBEC3D  140564  apolipoprotein B mRNA editing enzyme catalytic subunit 3D
AliasesA3D; APOBEC3DE; APOBEC3E; ARP6
GeneCards (Weizmann)APOBEC3D
Ensembl hg19 (Hinxton)ENSG00000243811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243811 [Gene_View]  chr22:39021113-39033251 [Contig_View]  APOBEC3D [Vega]
ICGC DataPortalENSG00000243811
TCGA cBioPortalAPOBEC3D
AceView (NCBI)APOBEC3D
Genatlas (Paris)APOBEC3D
WikiGenes140564
SOURCE (Princeton)APOBEC3D
Genetics Home Reference (NIH)APOBEC3D
Genomic and cartography
GoldenPath hg38 (UCSC)APOBEC3D  -     chr22:39021113-39033251 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOBEC3D  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblAPOBEC3D - 22q13.1 [CytoView hg19]  APOBEC3D - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIAPOBEC3D [Mapview hg19]  APOBEC3D [Mapview hg38]
OMIM609900   
Gene and transcription
Genbank (Entrez)BC017022 BC148619 BC153185 BE888971 BF832090
RefSeq transcript (Entrez)NM_152426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOBEC3D
Cluster EST : UnigeneHs.658626 [ NCBI ]
CGAP (NCI)Hs.658626
Alternative Splicing GalleryENSG00000243811
Gene ExpressionAPOBEC3D [ NCBI-GEO ]   APOBEC3D [ EBI - ARRAY_EXPRESS ]   APOBEC3D [ SEEK ]   APOBEC3D [ MEM ]
Gene Expression Viewer (FireBrowse)APOBEC3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140564
GTEX Portal (Tissue expression)APOBEC3D
Human Protein AtlasENSG00000243811-APOBEC3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AK3
Splice isoforms : SwissVarQ96AK3
PhosPhoSitePlusQ96AK3
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_1 (PS00903)    CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC/CMP_deaminase_Zn-bd    APOBEC_N    CMP_dCMP_Zn-bd    Cytidine_deaminase-like   
Domain families : Pfam (Sanger)APOBEC_N (PF08210)   
Domain families : Pfam (NCBI)pfam08210   
Conserved Domain (NCBI)APOBEC3D
DMDM Disease mutations140564
Blocks (Seattle)APOBEC3D
SuperfamilyQ96AK3
Human Protein Atlas [tissue]ENSG00000243811-APOBEC3D [tissue]
Peptide AtlasQ96AK3
HPRD16501
IPIIPI00413447   IPI00447705   
Protein Interaction databases
DIP (DOE-UCLA)Q96AK3
IntAct (EBI)Q96AK3
FunCoupENSG00000243811
BioGRIDAPOBEC3D
STRING (EMBL)APOBEC3D
ZODIACAPOBEC3D
Ontologies - Pathways
QuickGOQ96AK3
Ontology : AmiGOP-body  cytoplasm  zinc ion binding  negative regulation of transposition  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines  innate immune response  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  defense response to virus  DNA cytosine deamination  
Ontology : EGO-EBIP-body  cytoplasm  zinc ion binding  negative regulation of transposition  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines  innate immune response  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  defense response to virus  DNA cytosine deamination  
NDEx NetworkAPOBEC3D
Atlas of Cancer Signalling NetworkAPOBEC3D
Wikipedia pathwaysAPOBEC3D
Orthology - Evolution
OrthoDB140564
GeneTree (enSembl)ENSG00000243811
Phylogenetic Trees/Animal Genes : TreeFamAPOBEC3D
HOVERGENQ96AK3
HOGENOMQ96AK3
Homologs : HomoloGeneAPOBEC3D
Homology/Alignments : Family Browser (UCSC)APOBEC3D
Gene fusions - Rearrangements
Fusion: Tumor Portal APOBEC3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOBEC3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOBEC3D
dbVarAPOBEC3D
ClinVarAPOBEC3D
1000_GenomesAPOBEC3D 
Exome Variant ServerAPOBEC3D
ExAC (Exome Aggregation Consortium)ENSG00000243811
GNOMAD BrowserENSG00000243811
Genetic variants : HAPMAP140564
Genomic Variants (DGV)APOBEC3D [DGVbeta]
DECIPHERAPOBEC3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOBEC3D 
Mutations
ICGC Data PortalAPOBEC3D 
TCGA Data PortalAPOBEC3D 
Broad Tumor PortalAPOBEC3D
OASIS PortalAPOBEC3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOBEC3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOBEC3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOBEC3D
DgiDB (Drug Gene Interaction Database)APOBEC3D
DoCM (Curated mutations)APOBEC3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOBEC3D (select a term)
intoGenAPOBEC3D
Cancer3DAPOBEC3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609900   
Orphanet
MedgenAPOBEC3D
Genetic Testing Registry APOBEC3D
NextProtQ96AK3 [Medical]
TSGene140564
GENETestsAPOBEC3D
Target ValidationAPOBEC3D
Huge Navigator APOBEC3D [HugePedia]
snp3D : Map Gene to Disease140564
BioCentury BCIQAPOBEC3D
ClinGenAPOBEC3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140564
Chemical/Pharm GKB GenePA24894
Clinical trialAPOBEC3D
Miscellaneous
canSAR (ICR)APOBEC3D (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOBEC3D
EVEXAPOBEC3D
GoPubMedAPOBEC3D
iHOPAPOBEC3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:03 CET 2017

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