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APOBEC3H (apolipoprotein B mRNA editing enzyme catalytic subunit 3H)

Identity

Alias_namesapolipoprotein B mRNA editing enzyme
Alias_symbol (synonym)ARP10
Other aliasA3H
ARP-10
HGNC (Hugo) APOBEC3H
LocusID (NCBI) 164668
Atlas_Id 50124
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39097224 and ends at 39104067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOBEC3H   24100
Cards
Entrez_Gene (NCBI)APOBEC3H  164668  apolipoprotein B mRNA editing enzyme catalytic subunit 3H
AliasesA3H; ARP-10; ARP10
GeneCards (Weizmann)APOBEC3H
Ensembl hg19 (Hinxton)ENSG00000100298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100298 [Gene_View]  chr22:39097224-39104067 [Contig_View]  APOBEC3H [Vega]
ICGC DataPortalENSG00000100298
TCGA cBioPortalAPOBEC3H
AceView (NCBI)APOBEC3H
Genatlas (Paris)APOBEC3H
WikiGenes164668
SOURCE (Princeton)APOBEC3H
Genetics Home Reference (NIH)APOBEC3H
Genomic and cartography
GoldenPath hg38 (UCSC)APOBEC3H  -     chr22:39097224-39104067 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOBEC3H  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblAPOBEC3H - 22q13.1 [CytoView hg19]  APOBEC3H - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIAPOBEC3H [Mapview hg19]  APOBEC3H [Mapview hg38]
OMIM610976   
Gene and transcription
Genbank (Entrez)BC069023 BQ052182 BQ054330 BU585251 CR456481
RefSeq transcript (Entrez)NM_001166002 NM_001166003 NM_001166004 NM_181773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOBEC3H
Cluster EST : UnigeneHs.440515 [ NCBI ]
CGAP (NCI)Hs.440515
Alternative Splicing GalleryENSG00000100298
Gene ExpressionAPOBEC3H [ NCBI-GEO ]   APOBEC3H [ EBI - ARRAY_EXPRESS ]   APOBEC3H [ SEEK ]   APOBEC3H [ MEM ]
Gene Expression Viewer (FireBrowse)APOBEC3H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164668
GTEX Portal (Tissue expression)APOBEC3H
Human Protein AtlasENSG00000100298-APOBEC3H [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NTF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NTF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NTF7
Splice isoforms : SwissVarQ6NTF7
Catalytic activity : Enzyme3.5.4.- [ Enzyme-Expasy ]   3.5.4.-3.5.4.- [ IntEnz-EBI ]   3.5.4.- [ BRENDA ]   3.5.4.- [ KEGG ]   
PhosPhoSitePlusQ6NTF7
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_1 (PS00903)    CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC/CMP_deaminase_Zn-bd    APOBEC_N    CMP_dCMP_Zn-bd    Cytidine_deaminase-like   
Domain families : Pfam (Sanger)APOBEC_N (PF08210)   
Domain families : Pfam (NCBI)pfam08210   
Conserved Domain (NCBI)APOBEC3H
DMDM Disease mutations164668
Blocks (Seattle)APOBEC3H
SuperfamilyQ6NTF7
Human Protein Atlas [tissue]ENSG00000100298-APOBEC3H [tissue]
Peptide AtlasQ6NTF7
HPRD16508
IPIIPI00873390   IPI00472346   IPI00375550   IPI00921044   
Protein Interaction databases
DIP (DOE-UCLA)Q6NTF7
IntAct (EBI)Q6NTF7
FunCoupENSG00000100298
BioGRIDAPOBEC3H
STRING (EMBL)APOBEC3H
ZODIACAPOBEC3H
Ontologies - Pathways
QuickGOQ6NTF7
Ontology : AmiGOP-body  cytidine deaminase activity  protein binding  nucleus  cytoplasm  zinc ion binding  cytidine deamination  negative regulation of transposition  negative regulation of transposition  innate immune response  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  negative regulation of viral process  defense response to virus  DNA cytosine deamination  
Ontology : EGO-EBIP-body  cytidine deaminase activity  protein binding  nucleus  cytoplasm  zinc ion binding  cytidine deamination  negative regulation of transposition  negative regulation of transposition  innate immune response  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  negative regulation of viral process  defense response to virus  DNA cytosine deamination  
NDEx NetworkAPOBEC3H
Atlas of Cancer Signalling NetworkAPOBEC3H
Wikipedia pathwaysAPOBEC3H
Orthology - Evolution
OrthoDB164668
GeneTree (enSembl)ENSG00000100298
Phylogenetic Trees/Animal Genes : TreeFamAPOBEC3H
HOVERGENQ6NTF7
HOGENOMQ6NTF7
Homologs : HomoloGeneAPOBEC3H
Homology/Alignments : Family Browser (UCSC)APOBEC3H
Gene fusions - Rearrangements
Tumor Fusion PortalAPOBEC3H
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOBEC3H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOBEC3H
dbVarAPOBEC3H
ClinVarAPOBEC3H
1000_GenomesAPOBEC3H 
Exome Variant ServerAPOBEC3H
ExAC (Exome Aggregation Consortium)ENSG00000100298
GNOMAD BrowserENSG00000100298
Genetic variants : HAPMAP164668
Genomic Variants (DGV)APOBEC3H [DGVbeta]
DECIPHERAPOBEC3H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOBEC3H 
Mutations
ICGC Data PortalAPOBEC3H 
TCGA Data PortalAPOBEC3H 
Broad Tumor PortalAPOBEC3H
OASIS PortalAPOBEC3H [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOBEC3H  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOBEC3H
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOBEC3H
DgiDB (Drug Gene Interaction Database)APOBEC3H
DoCM (Curated mutations)APOBEC3H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOBEC3H (select a term)
intoGenAPOBEC3H
Cancer3DAPOBEC3H(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610976   
Orphanet
DisGeNETAPOBEC3H
MedgenAPOBEC3H
Genetic Testing Registry APOBEC3H
NextProtQ6NTF7 [Medical]
TSGene164668
GENETestsAPOBEC3H
Target ValidationAPOBEC3H
Huge Navigator APOBEC3H [HugePedia]
snp3D : Map Gene to Disease164668
BioCentury BCIQAPOBEC3H
ClinGenAPOBEC3H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164668
Chemical/Pharm GKB GenePA162376694
Clinical trialAPOBEC3H
Miscellaneous
canSAR (ICR)APOBEC3H (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOBEC3H
EVEXAPOBEC3H
GoPubMedAPOBEC3H
iHOPAPOBEC3H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:21 CET 2017

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