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APOBEC4 (apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4)

Identity

Alias_namesC1orf169
chromosome 1 open reading frame 169
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
Alias_symbol (synonym)MGC26594
FLJ25691
RP1-127C7.4
Other alias
HGNC (Hugo) APOBEC4
LocusID (NCBI) 403314
Atlas_Id 60429
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 183646276 and ends at 183653313 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOBEC4   32152
Cards
Entrez_Gene (NCBI)APOBEC4  403314  apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
AliasesC1orf169
GeneCards (Weizmann)APOBEC4
Ensembl hg19 (Hinxton)ENSG00000173627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173627 [Gene_View]  chr1:183646276-183653313 [Contig_View]  APOBEC4 [Vega]
ICGC DataPortalENSG00000173627
TCGA cBioPortalAPOBEC4
AceView (NCBI)APOBEC4
Genatlas (Paris)APOBEC4
WikiGenes403314
SOURCE (Princeton)APOBEC4
Genetics Home Reference (NIH)APOBEC4
Genomic and cartography
GoldenPath hg38 (UCSC)APOBEC4  -     chr1:183646276-183653313 -  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOBEC4  -     1q25.3   [Description]    (hg19-Feb_2009)
EnsemblAPOBEC4 - 1q25.3 [CytoView hg19]  APOBEC4 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIAPOBEC4 [Mapview hg19]  APOBEC4 [Mapview hg38]
OMIM609908   
Gene and transcription
Genbank (Entrez)AI961390 AK098557 BC021711 JF432701
RefSeq transcript (Entrez)NM_203454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOBEC4
Cluster EST : UnigeneHs.97335 [ NCBI ]
CGAP (NCI)Hs.97335
Alternative Splicing GalleryENSG00000173627
Gene ExpressionAPOBEC4 [ NCBI-GEO ]   APOBEC4 [ EBI - ARRAY_EXPRESS ]   APOBEC4 [ SEEK ]   APOBEC4 [ MEM ]
Gene Expression Viewer (FireBrowse)APOBEC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403314
GTEX Portal (Tissue expression)APOBEC4
Human Protein AtlasENSG00000173627-APOBEC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW27
Splice isoforms : SwissVarQ8WW27
Catalytic activity : Enzyme3.5.4.- [ Enzyme-Expasy ]   3.5.4.-3.5.4.- [ IntEnz-EBI ]   3.5.4.- [ BRENDA ]   3.5.4.- [ KEGG ]   
PhosPhoSitePlusQ8WW27
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC_N    CMP_dCMP_Zn-bd   
Domain families : Pfam (Sanger)APOBEC_N (PF08210)   
Domain families : Pfam (NCBI)pfam08210   
Conserved Domain (NCBI)APOBEC4
DMDM Disease mutations403314
Blocks (Seattle)APOBEC4
SuperfamilyQ8WW27
Human Protein Atlas [tissue]ENSG00000173627-APOBEC4 [tissue]
Peptide AtlasQ8WW27
HPRD17522
IPIIPI00550646   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW27
IntAct (EBI)Q8WW27
FunCoupENSG00000173627
BioGRIDAPOBEC4
STRING (EMBL)APOBEC4
ZODIACAPOBEC4
Ontologies - Pathways
QuickGOQ8WW27
Ontology : AmiGOmRNA processing  zinc ion binding  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines  
Ontology : EGO-EBImRNA processing  zinc ion binding  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines  
NDEx NetworkAPOBEC4
Atlas of Cancer Signalling NetworkAPOBEC4
Wikipedia pathwaysAPOBEC4
Orthology - Evolution
OrthoDB403314
GeneTree (enSembl)ENSG00000173627
Phylogenetic Trees/Animal Genes : TreeFamAPOBEC4
HOVERGENQ8WW27
HOGENOMQ8WW27
Homologs : HomoloGeneAPOBEC4
Homology/Alignments : Family Browser (UCSC)APOBEC4
Gene fusions - Rearrangements
Fusion: Tumor Portal APOBEC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOBEC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOBEC4
dbVarAPOBEC4
ClinVarAPOBEC4
1000_GenomesAPOBEC4 
Exome Variant ServerAPOBEC4
ExAC (Exome Aggregation Consortium)ENSG00000173627
GNOMAD BrowserENSG00000173627
Genetic variants : HAPMAP403314
Genomic Variants (DGV)APOBEC4 [DGVbeta]
DECIPHERAPOBEC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOBEC4 
Mutations
ICGC Data PortalAPOBEC4 
TCGA Data PortalAPOBEC4 
Broad Tumor PortalAPOBEC4
OASIS PortalAPOBEC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOBEC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOBEC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOBEC4
DgiDB (Drug Gene Interaction Database)APOBEC4
DoCM (Curated mutations)APOBEC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOBEC4 (select a term)
intoGenAPOBEC4
Cancer3DAPOBEC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609908   
Orphanet
MedgenAPOBEC4
Genetic Testing Registry APOBEC4
NextProtQ8WW27 [Medical]
TSGene403314
GENETestsAPOBEC4
Target ValidationAPOBEC4
Huge Navigator APOBEC4 [HugePedia]
snp3D : Map Gene to Disease403314
BioCentury BCIQAPOBEC4
ClinGenAPOBEC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403314
Chemical/Pharm GKB GenePA142672597
Clinical trialAPOBEC4
Miscellaneous
canSAR (ICR)APOBEC4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOBEC4
EVEXAPOBEC4
GoPubMedAPOBEC4
iHOPAPOBEC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:38:03 CET 2017

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