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APOBR (apolipoprotein B receptor)

Identity

Alias_symbol (synonym)APOB48R
APOB100R
Other alias
HGNC (Hugo) APOBR
LocusID (NCBI) 55911
Atlas_Id 60430
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 28494649 and ends at 28498970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOBR   24087
Cards
Entrez_Gene (NCBI)APOBR  55911  apolipoprotein B receptor
AliasesAPOB100R; APOB48R
GeneCards (Weizmann)APOBR
Ensembl hg19 (Hinxton)ENSG00000184730 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184730 [Gene_View]  chr16:28494649-28498970 [Contig_View]  APOBR [Vega]
ICGC DataPortalENSG00000184730
TCGA cBioPortalAPOBR
AceView (NCBI)APOBR
Genatlas (Paris)APOBR
WikiGenes55911
SOURCE (Princeton)APOBR
Genetics Home Reference (NIH)APOBR
Genomic and cartography
GoldenPath hg38 (UCSC)APOBR  -     chr16:28494649-28498970 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOBR  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblAPOBR - 16p12.1 [CytoView hg19]  APOBR - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIAPOBR [Mapview hg19]  APOBR [Mapview hg38]
OMIM605220   
Gene and transcription
Genbank (Entrez)AF141332 AF141334 AK025123 AK075085 BC119786
RefSeq transcript (Entrez)NM_018690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOBR
Cluster EST : UnigeneHs.200333 [ NCBI ]
CGAP (NCI)Hs.200333
Alternative Splicing GalleryENSG00000184730
Gene ExpressionAPOBR [ NCBI-GEO ]   APOBR [ EBI - ARRAY_EXPRESS ]   APOBR [ SEEK ]   APOBR [ MEM ]
Gene Expression Viewer (FireBrowse)APOBR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55911
GTEX Portal (Tissue expression)APOBR
Human Protein AtlasENSG00000184730-APOBR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VD83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VD83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VD83
Splice isoforms : SwissVarQ0VD83
PhosPhoSitePlusQ0VD83
Domains : Interpro (EBI)ApolipoprotB_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)APOBR
DMDM Disease mutations55911
Blocks (Seattle)APOBR
SuperfamilyQ0VD83
Human Protein Atlas [tissue]ENSG00000184730-APOBR [tissue]
Peptide AtlasQ0VD83
HPRD05561
IPIIPI00889551   IPI00889754   IPI00953704   IPI00399183   
Protein Interaction databases
DIP (DOE-UCLA)Q0VD83
IntAct (EBI)Q0VD83
FunCoupENSG00000184730
BioGRIDAPOBR
STRING (EMBL)APOBR
ZODIACAPOBR
Ontologies - Pathways
QuickGOQ0VD83
Ontology : AmiGOplasma membrane  triglyceride metabolic process  lipid transport  receptor-mediated endocytosis  cholesterol metabolic process  membrane  very-low-density lipoprotein particle receptor activity  very-low-density lipoprotein particle  low-density lipoprotein particle  lipoprotein metabolic process  chylomicron  
Ontology : EGO-EBIplasma membrane  triglyceride metabolic process  lipid transport  receptor-mediated endocytosis  cholesterol metabolic process  membrane  very-low-density lipoprotein particle receptor activity  very-low-density lipoprotein particle  low-density lipoprotein particle  lipoprotein metabolic process  chylomicron  
NDEx NetworkAPOBR
Atlas of Cancer Signalling NetworkAPOBR
Wikipedia pathwaysAPOBR
Orthology - Evolution
OrthoDB55911
GeneTree (enSembl)ENSG00000184730
Phylogenetic Trees/Animal Genes : TreeFamAPOBR
HOVERGENQ0VD83
HOGENOMQ0VD83
Homologs : HomoloGeneAPOBR
Homology/Alignments : Family Browser (UCSC)APOBR
Gene fusions - Rearrangements
Tumor Fusion PortalAPOBR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOBR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOBR
dbVarAPOBR
ClinVarAPOBR
1000_GenomesAPOBR 
Exome Variant ServerAPOBR
ExAC (Exome Aggregation Consortium)ENSG00000184730
GNOMAD BrowserENSG00000184730
Genetic variants : HAPMAP55911
Genomic Variants (DGV)APOBR [DGVbeta]
DECIPHERAPOBR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOBR 
Mutations
ICGC Data PortalAPOBR 
TCGA Data PortalAPOBR 
Broad Tumor PortalAPOBR
OASIS PortalAPOBR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOBR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOBR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOBR
DgiDB (Drug Gene Interaction Database)APOBR
DoCM (Curated mutations)APOBR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOBR (select a term)
intoGenAPOBR
Cancer3DAPOBR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605220   
Orphanet
DisGeNETAPOBR
MedgenAPOBR
Genetic Testing Registry APOBR
NextProtQ0VD83 [Medical]
TSGene55911
GENETestsAPOBR
Target ValidationAPOBR
Huge Navigator APOBR [HugePedia]
snp3D : Map Gene to Disease55911
BioCentury BCIQAPOBR
ClinGenAPOBR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55911
Chemical/Pharm GKB GenePA166048957
Clinical trialAPOBR
Miscellaneous
canSAR (ICR)APOBR (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOBR
EVEXAPOBR
GoPubMedAPOBR
iHOPAPOBR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:50 CET 2017

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