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APOC4 (apolipoprotein C4)

Identity

Alias_namesapolipoprotein C-IV
Other aliasAPO-CIV
APOC-IV
HGNC (Hugo) APOC4
LocusID (NCBI) 346
Atlas_Id 60432
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 44942238 and ends at 44945496 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOC4 (19q13.32) / DLG3 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOC4   611
Cards
Entrez_Gene (NCBI)APOC4  346  apolipoprotein C4
AliasesAPO-CIV; APOC-IV
GeneCards (Weizmann)APOC4
Ensembl hg19 (Hinxton)ENSG00000267467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267467 [Gene_View]  chr19:44942238-44945496 [Contig_View]  APOC4 [Vega]
ICGC DataPortalENSG00000267467
TCGA cBioPortalAPOC4
AceView (NCBI)APOC4
Genatlas (Paris)APOC4
WikiGenes346
SOURCE (Princeton)APOC4
Genetics Home Reference (NIH)APOC4
Genomic and cartography
GoldenPath hg38 (UCSC)APOC4  -     chr19:44942238-44945496 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOC4  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblAPOC4 - 19q13.32 [CytoView hg19]  APOC4 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIAPOC4 [Mapview hg19]  APOC4 [Mapview hg38]
OMIM600745   
Gene and transcription
Genbank (Entrez)AV690709 BC020723 DB185657 EF371378
RefSeq transcript (Entrez)NM_001646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOC4
Cluster EST : UnigeneHs.731599 [ NCBI ]
CGAP (NCI)Hs.731599
Alternative Splicing GalleryENSG00000267467
Gene ExpressionAPOC4 [ NCBI-GEO ]   APOC4 [ EBI - ARRAY_EXPRESS ]   APOC4 [ SEEK ]   APOC4 [ MEM ]
Gene Expression Viewer (FireBrowse)APOC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346
GTEX Portal (Tissue expression)APOC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55056   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55056  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55056
Splice isoforms : SwissVarP55056
PhosPhoSitePlusP55056
Domains : Interpro (EBI)APOC4   
Domain families : Pfam (Sanger)APOC4 (PF15119)   
Domain families : Pfam (NCBI)pfam15119   
Conserved Domain (NCBI)APOC4
DMDM Disease mutations346
Blocks (Seattle)APOC4
SuperfamilyP55056
Human Protein AtlasENSG00000267467
Peptide AtlasP55056
HPRD02848
IPIIPI00022731   
Protein Interaction databases
DIP (DOE-UCLA)P55056
IntAct (EBI)P55056
FunCoupENSG00000267467
BioGRIDAPOC4
STRING (EMBL)APOC4
ZODIACAPOC4
Ontologies - Pathways
QuickGOP55056
Ontology : AmiGOlipid transporter activity  extracellular region  lipid metabolic process  lipid transport  positive regulation of sequestering of triglyceride  very-low-density lipoprotein particle  very-low-density lipoprotein particle  high-density lipoprotein particle  lipoprotein metabolic process  triglyceride homeostasis  
Ontology : EGO-EBIlipid transporter activity  extracellular region  lipid metabolic process  lipid transport  positive regulation of sequestering of triglyceride  very-low-density lipoprotein particle  very-low-density lipoprotein particle  high-density lipoprotein particle  lipoprotein metabolic process  triglyceride homeostasis  
NDEx NetworkAPOC4
Atlas of Cancer Signalling NetworkAPOC4
Wikipedia pathwaysAPOC4
Orthology - Evolution
OrthoDB346
GeneTree (enSembl)ENSG00000267467
Phylogenetic Trees/Animal Genes : TreeFamAPOC4
HOVERGENP55056
HOGENOMP55056
Homologs : HomoloGeneAPOC4
Homology/Alignments : Family Browser (UCSC)APOC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOC4
dbVarAPOC4
ClinVarAPOC4
1000_GenomesAPOC4 
Exome Variant ServerAPOC4
ExAC (Exome Aggregation Consortium)APOC4 (select the gene name)
Genetic variants : HAPMAP346
Genomic Variants (DGV)APOC4 [DGVbeta]
DECIPHERAPOC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOC4 
Mutations
ICGC Data PortalAPOC4 
TCGA Data PortalAPOC4 
Broad Tumor PortalAPOC4
OASIS PortalAPOC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOC4
DgiDB (Drug Gene Interaction Database)APOC4
DoCM (Curated mutations)APOC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOC4 (select a term)
intoGenAPOC4
Cancer3DAPOC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600745   
Orphanet
MedgenAPOC4
Genetic Testing Registry APOC4
NextProtP55056 [Medical]
TSGene346
GENETestsAPOC4
Target ValidationAPOC4
Huge Navigator APOC4 [HugePedia]
snp3D : Map Gene to Disease346
BioCentury BCIQAPOC4
ClinGenAPOC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346
Chemical/Pharm GKB GenePA54
Clinical trialAPOC4
Miscellaneous
canSAR (ICR)APOC4 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOC4
EVEXAPOC4
GoPubMedAPOC4
iHOPAPOC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:36 CEST 2017

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