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APOF (apolipoprotein F)

Identity

Other aliasApo-F
LTIP
HGNC (Hugo) APOF
LocusID (NCBI) 319
Atlas_Id 52661
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56754355 and ends at 56756583 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOF   615
Cards
Entrez_Gene (NCBI)APOF  319  apolipoprotein F
AliasesApo-F; LTIP
GeneCards (Weizmann)APOF
Ensembl hg19 (Hinxton)ENSG00000175336 [Gene_View]  chr12:56754355-56756583 [Contig_View]  APOF [Vega]
Ensembl hg38 (Hinxton)ENSG00000175336 [Gene_View]  chr12:56754355-56756583 [Contig_View]  APOF [Vega]
ICGC DataPortalENSG00000175336
TCGA cBioPortalAPOF
AceView (NCBI)APOF
Genatlas (Paris)APOF
WikiGenes319
SOURCE (Princeton)APOF
Genetics Home Reference (NIH)APOF
Genomic and cartography
GoldenPath hg19 (UCSC)APOF  -     chr12:56754355-56756583 -  12q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)APOF  -     12q13.3   [Description]    (hg38-Dec_2013)
EnsemblAPOF - 12q13.3 [CytoView hg19]  APOF - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIAPOF [Mapview hg19]  APOF [Mapview hg38]
OMIM107760   
Gene and transcription
Genbank (Entrez)AK314892 BC026257 CR936663 HQ447649 L27050
RefSeq transcript (Entrez)NM_001638
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)APOF
Cluster EST : UnigeneHs.534302 [ NCBI ]
CGAP (NCI)Hs.534302
Alternative Splicing GalleryENSG00000175336
Gene ExpressionAPOF [ NCBI-GEO ]   APOF [ EBI - ARRAY_EXPRESS ]   APOF [ SEEK ]   APOF [ MEM ]
Gene Expression Viewer (FireBrowse)APOF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)319
GTEX Portal (Tissue expression)APOF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13790   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13790  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13790
Splice isoforms : SwissVarQ13790
PhosPhoSitePlusQ13790
Domains : Interpro (EBI)APOF   
Domain families : Pfam (Sanger)Apolipo_F (PF15148)   
Domain families : Pfam (NCBI)pfam15148   
Conserved Domain (NCBI)APOF
DMDM Disease mutations319
Blocks (Seattle)APOF
SuperfamilyQ13790
Human Protein AtlasENSG00000175336
Peptide AtlasQ13790
HPRD00137
IPIIPI00299435   IPI01012338   
Protein Interaction databases
DIP (DOE-UCLA)Q13790
IntAct (EBI)Q13790
FunCoupENSG00000175336
BioGRIDAPOF
STRING (EMBL)APOF
ZODIACAPOF
Ontologies - Pathways
QuickGOQ13790
Ontology : AmiGOreceptor binding  lipid transporter activity  extracellular region  lipid metabolic process  lipid transport  cholesterol metabolic process  cholesterol binding  low-density lipoprotein particle  high-density lipoprotein particle  
Ontology : EGO-EBIreceptor binding  lipid transporter activity  extracellular region  lipid metabolic process  lipid transport  cholesterol metabolic process  cholesterol binding  low-density lipoprotein particle  high-density lipoprotein particle  
NDEx NetworkAPOF
Atlas of Cancer Signalling NetworkAPOF
Wikipedia pathwaysAPOF
Orthology - Evolution
OrthoDB319
GeneTree (enSembl)ENSG00000175336
Phylogenetic Trees/Animal Genes : TreeFamAPOF
HOVERGENQ13790
HOGENOMQ13790
Homologs : HomoloGeneAPOF
Homology/Alignments : Family Browser (UCSC)APOF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOF
dbVarAPOF
ClinVarAPOF
1000_GenomesAPOF 
Exome Variant ServerAPOF
ExAC (Exome Aggregation Consortium)APOF (select the gene name)
Genetic variants : HAPMAP319
Genomic Variants (DGV)APOF [DGVbeta]
DECIPHER (Syndromes)12:56754355-56756583  ENSG00000175336
CONAN: Copy Number AnalysisAPOF 
Mutations
ICGC Data PortalAPOF 
TCGA Data PortalAPOF 
Broad Tumor PortalAPOF
OASIS PortalAPOF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOF
DgiDB (Drug Gene Interaction Database)APOF
DoCM (Curated mutations)APOF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOF (select a term)
intoGenAPOF
Cancer3DAPOF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM107760   
Orphanet
MedgenAPOF
Genetic Testing Registry APOF
NextProtQ13790 [Medical]
TSGene319
GENETestsAPOF
Huge Navigator APOF [HugePedia]
snp3D : Map Gene to Disease319
BioCentury BCIQAPOF
ClinGenAPOF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD319
Chemical/Pharm GKB GenePA24902
Clinical trialAPOF
Miscellaneous
canSAR (ICR)APOF (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOF
EVEXAPOF
GoPubMedAPOF
iHOPAPOF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:09 CET 2017

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