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APOL4 (apolipoprotein L, 4)

Identity

Alias_symbol (synonym)APOLIV
Other aliasAPOL-IV
HGNC (Hugo) APOL4
LocusID (NCBI) 80832
Atlas_Id 60434
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 36585176 and ends at 36600879 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MKL1 (22q13.1) / APOL4 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOL4   14867
Cards
Entrez_Gene (NCBI)APOL4  80832  apolipoprotein L, 4
AliasesAPOL-IV; APOLIV
GeneCards (Weizmann)APOL4
Ensembl hg19 (Hinxton)ENSG00000100336 [Gene_View]  chr22:36585176-36600879 [Contig_View]  APOL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100336 [Gene_View]  chr22:36585176-36600879 [Contig_View]  APOL4 [Vega]
ICGC DataPortalENSG00000100336
TCGA cBioPortalAPOL4
AceView (NCBI)APOL4
Genatlas (Paris)APOL4
WikiGenes80832
SOURCE (Princeton)APOL4
Genetics Home Reference (NIH)APOL4
Genomic and cartography
GoldenPath hg19 (UCSC)APOL4  -     chr22:36585176-36600879 -  22q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)APOL4  -     22q12.3   [Description]    (hg38-Dec_2013)
EnsemblAPOL4 - 22q12.3 [CytoView hg19]  APOL4 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIAPOL4 [Mapview hg19]  APOL4 [Mapview hg38]
OMIM181500   607254   
Gene and transcription
Genbank (Entrez)AF305226 AK225696 AK290466 AK290777 AK311506
RefSeq transcript (Entrez)NM_030643 NM_145660
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_023437 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)APOL4
Cluster EST : UnigeneHs.115099 [ NCBI ]
CGAP (NCI)Hs.115099
Alternative Splicing GalleryENSG00000100336
Gene ExpressionAPOL4 [ NCBI-GEO ]   APOL4 [ EBI - ARRAY_EXPRESS ]   APOL4 [ SEEK ]   APOL4 [ MEM ]
Gene Expression Viewer (FireBrowse)APOL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80832
GTEX Portal (Tissue expression)APOL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPW4
Splice isoforms : SwissVarQ9BPW4
PhosPhoSitePlusQ9BPW4
Domains : Interpro (EBI)ApoL   
Domain families : Pfam (Sanger)ApoL (PF05461)   
Domain families : Pfam (NCBI)pfam05461   
Conserved Domain (NCBI)APOL4
DMDM Disease mutations80832
Blocks (Seattle)APOL4
SuperfamilyQ9BPW4
Human Protein AtlasENSG00000100336
Peptide AtlasQ9BPW4
HPRD16237
IPIIPI00028171   IPI00218384   IPI00843938   IPI00002138   IPI00877796   IPI00878092   IPI00878246   IPI00942575   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPW4
IntAct (EBI)Q9BPW4
FunCoupENSG00000100336
BioGRIDAPOL4
STRING (EMBL)APOL4
ZODIACAPOL4
Ontologies - Pathways
QuickGOQ9BPW4
Ontology : AmiGOmolecular_function  cellular_component  extracellular space  lipid metabolic process  lipid transport  lipid binding  lipoprotein metabolic process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular space  lipid metabolic process  lipid transport  lipid binding  lipoprotein metabolic process  
NDEx NetworkAPOL4
Atlas of Cancer Signalling NetworkAPOL4
Wikipedia pathwaysAPOL4
Orthology - Evolution
OrthoDB80832
GeneTree (enSembl)ENSG00000100336
Phylogenetic Trees/Animal Genes : TreeFamAPOL4
HOVERGENQ9BPW4
HOGENOMQ9BPW4
Homologs : HomoloGeneAPOL4
Homology/Alignments : Family Browser (UCSC)APOL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOL4
dbVarAPOL4
ClinVarAPOL4
1000_GenomesAPOL4 
Exome Variant ServerAPOL4
ExAC (Exome Aggregation Consortium)APOL4 (select the gene name)
Genetic variants : HAPMAP80832
Genomic Variants (DGV)APOL4 [DGVbeta]
DECIPHER (Syndromes)22:36585176-36600879  ENSG00000100336
CONAN: Copy Number AnalysisAPOL4 
Mutations
ICGC Data PortalAPOL4 
TCGA Data PortalAPOL4 
Broad Tumor PortalAPOL4
OASIS PortalAPOL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOL4
DgiDB (Drug Gene Interaction Database)APOL4
DoCM (Curated mutations)APOL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOL4 (select a term)
intoGenAPOL4
Cancer3DAPOL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM181500    607254   
Orphanet
MedgenAPOL4
Genetic Testing Registry APOL4
NextProtQ9BPW4 [Medical]
TSGene80832
GENETestsAPOL4
Huge Navigator APOL4 [HugePedia]
snp3D : Map Gene to Disease80832
BioCentury BCIQAPOL4
ClinGenAPOL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80832
Chemical/Pharm GKB GenePA24907
Clinical trialAPOL4
Miscellaneous
canSAR (ICR)APOL4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOL4
EVEXAPOL4
GoPubMedAPOL4
iHOPAPOL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:45 CET 2017

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