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APOL5 (apolipoprotein L5)

Identity

Alias_symbol (synonym)APOLV
Other aliasAPOL-V
HGNC (Hugo) APOL5
LocusID (NCBI) 80831
Atlas_Id 60435
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 35717872 and ends at 35729482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRD1 (22q13.33) / APOL5 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOL5   14869
Cards
Entrez_Gene (NCBI)APOL5  80831  apolipoprotein L5
AliasesAPOL-V; APOLV
GeneCards (Weizmann)APOL5
Ensembl hg19 (Hinxton)ENSG00000128313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128313 [Gene_View]  chr22:35717872-35729482 [Contig_View]  APOL5 [Vega]
ICGC DataPortalENSG00000128313
TCGA cBioPortalAPOL5
AceView (NCBI)APOL5
Genatlas (Paris)APOL5
WikiGenes80831
SOURCE (Princeton)APOL5
Genetics Home Reference (NIH)APOL5
Genomic and cartography
GoldenPath hg38 (UCSC)APOL5  -     chr22:35717872-35729482 +  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOL5  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblAPOL5 - 22q12.3 [CytoView hg19]  APOL5 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIAPOL5 [Mapview hg19]  APOL5 [Mapview hg38]
OMIM607255   
Gene and transcription
Genbank (Entrez)AY014878 BC156795
RefSeq transcript (Entrez)NM_030642
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187630
Consensus coding sequences : CCDS (NCBI)APOL5
Cluster EST : UnigeneHs.326561 [ NCBI ]
CGAP (NCI)Hs.326561
Alternative Splicing GalleryENSG00000128313
Gene ExpressionAPOL5 [ NCBI-GEO ]   APOL5 [ EBI - ARRAY_EXPRESS ]   APOL5 [ SEEK ]   APOL5 [ MEM ]
Gene Expression Viewer (FireBrowse)APOL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80831
GTEX Portal (Tissue expression)APOL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWW9
Splice isoforms : SwissVarQ9BWW9
PhosPhoSitePlusQ9BWW9
Domains : Interpro (EBI)ApoL   
Domain families : Pfam (Sanger)ApoL (PF05461)   
Domain families : Pfam (NCBI)pfam05461   
Conserved Domain (NCBI)APOL5
DMDM Disease mutations80831
Blocks (Seattle)APOL5
SuperfamilyQ9BWW9
Human Protein AtlasENSG00000128313
Peptide AtlasQ9BWW9
HPRD06265
IPIIPI00032680   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWW9
IntAct (EBI)Q9BWW9
FunCoupENSG00000128313
BioGRIDAPOL5
STRING (EMBL)APOL5
ZODIACAPOL5
Ontologies - Pathways
QuickGOQ9BWW9
Ontology : AmiGOcellular_component  extracellular region  cytoplasm  lipid metabolic process  lipid transport  high-density lipoprotein particle binding  lipid binding  lipoprotein metabolic process  
Ontology : EGO-EBIcellular_component  extracellular region  cytoplasm  lipid metabolic process  lipid transport  high-density lipoprotein particle binding  lipid binding  lipoprotein metabolic process  
NDEx NetworkAPOL5
Atlas of Cancer Signalling NetworkAPOL5
Wikipedia pathwaysAPOL5
Orthology - Evolution
OrthoDB80831
GeneTree (enSembl)ENSG00000128313
Phylogenetic Trees/Animal Genes : TreeFamAPOL5
HOVERGENQ9BWW9
HOGENOMQ9BWW9
Homologs : HomoloGeneAPOL5
Homology/Alignments : Family Browser (UCSC)APOL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOL5
dbVarAPOL5
ClinVarAPOL5
1000_GenomesAPOL5 
Exome Variant ServerAPOL5
ExAC (Exome Aggregation Consortium)APOL5 (select the gene name)
Genetic variants : HAPMAP80831
Genomic Variants (DGV)APOL5 [DGVbeta]
DECIPHERAPOL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOL5 
Mutations
ICGC Data PortalAPOL5 
TCGA Data PortalAPOL5 
Broad Tumor PortalAPOL5
OASIS PortalAPOL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOL5
DgiDB (Drug Gene Interaction Database)APOL5
DoCM (Curated mutations)APOL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOL5 (select a term)
intoGenAPOL5
Cancer3DAPOL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607255   
Orphanet
MedgenAPOL5
Genetic Testing Registry APOL5
NextProtQ9BWW9 [Medical]
TSGene80831
GENETestsAPOL5
Huge Navigator APOL5 [HugePedia]
snp3D : Map Gene to Disease80831
BioCentury BCIQAPOL5
ClinGenAPOL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80831
Chemical/Pharm GKB GenePA24908
Clinical trialAPOL5
Miscellaneous
canSAR (ICR)APOL5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOL5
EVEXAPOL5
GoPubMedAPOL5
iHOPAPOL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:00:34 CEST 2017

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