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APOL6 (apolipoprotein L, 6)

Identity

Other namesAPOL-VI
APOLVI
HGNC (Hugo) APOL6
LocusID (NCBI) 80830
Location 22q12.3
Location_base_pair Starts at 36044424 and ends at 36064456 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)APOL6   14870
Cards
Entrez_Gene (NCBI)APOL6  80830  apolipoprotein L, 6
GeneCards (Weizmann)APOL6
Ensembl (Hinxton)ENSG00000221963 [Gene_View]  chr22:36044424-36064456 [Contig_View]  APOL6 [Vega]
ICGC DataPortalENSG00000221963
cBioPortalAPOL6
AceView (NCBI)APOL6
Genatlas (Paris)APOL6
WikiGenes80830
SOURCE (Princeton)NM_030641
Genomic and cartography
GoldenPath (UCSC)APOL6  -  22q12.3   chr22:36044424-36064456 +  22q12.3   [Description]    (hg19-Feb_2009)
EnsemblAPOL6 - 22q12.3 [CytoView]
Mapping of homologs : NCBIAPOL6 [Mapview]
OMIM607256   
Gene and transcription
Genbank (Entrez)AJ227900 AK074645 AK095881 AK097266 AL834420
RefSeq transcript (Entrez)NM_030641
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004929430
Consensus coding sequences : CCDS (NCBI)APOL6
Cluster EST : UnigeneHs.257352 [ NCBI ]
CGAP (NCI)Hs.257352
Alternative Splicing : Fast-db (Paris)GSHG0019983
Alternative Splicing GalleryENSG00000221963
Gene ExpressionAPOL6 [ NCBI-GEO ]     APOL6 [ SEEK ]   APOL6 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWW8 (Uniprot)
NextProtQ9BWW8  [Medical]
With graphics : InterProQ9BWW8
Splice isoforms : SwissVarQ9BWW8 (Swissvar)
Domains : Interpro (EBI)ApoL [organisation]  
Related proteins : CluSTrQ9BWW8
Domain families : Pfam (Sanger)ApoL (PF05461)   
Domain families : Pfam (NCBI)pfam05461   
DMDM Disease mutations80830
Blocks (Seattle)Q9BWW8
Human Protein AtlasENSG00000221963 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9BWW8
HPRD06266
IPIIPI00032679   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWW8
IntAct (EBI)Q9BWW8
FunCoupENSG00000221963
BioGRIDAPOL6
InParanoidQ9BWW8
Interologous Interaction database Q9BWW8
IntegromeDBAPOL6
STRING (EMBL)APOL6
Ontologies - Pathways
Ontology : AmiGOextracellular region  cytoplasm  lipid transport  lipid binding  lipoprotein metabolic process  
Ontology : EGO-EBIextracellular region  cytoplasm  lipid transport  lipid binding  lipoprotein metabolic process  
Protein Interaction DatabaseAPOL6
Wikipedia pathwaysAPOL6
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)APOL6
snp3D : Map Gene to Disease80830
SNP (GeneSNP Utah)APOL6
SNP : HGBaseAPOL6
Genetic variants : HAPMAPAPOL6
Exome VariantAPOL6
1000_GenomesAPOL6 
ICGC programENSG00000221963 
Somatic Mutations in Cancer : COSMICAPOL6 
CONAN: Copy Number AnalysisAPOL6 
Mutations and Diseases : HGMDAPOL6
Mutations and Diseases : intOGenAPOL6
Genomic VariantsAPOL6  APOL6 [DGVbeta]
dbVarAPOL6
ClinVarAPOL6
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM607256   
MedgenAPOL6
GENETestsAPOL6
Disease Genetic AssociationAPOL6
Huge Navigator APOL6 [HugePedia]  APOL6 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneAPOL6
Homology/Alignments : Family Browser (UCSC)APOL6
Phylogenetic Trees/Animal Genes : TreeFamAPOL6
Chemical/Protein Interactions : CTD80830
Chemical/Pharm GKB GenePA24909
Clinical trialAPOL6
Cancer Resource (Charite)ENSG00000221963
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineAPOL6
iHOPAPOL6
OncoSearchAPOL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:38:25 CEST 2014

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