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APOL6 (apolipoprotein L, 6)

Identity

Other namesAPOL-VI
APOLVI
HGNC (Hugo) APOL6
LocusID (NCBI) 80830
Location 22q12.3
Location_base_pair Starts at 36044424 and ends at 36064456 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)APOL6   14870
Entrez_Gene (NCBI)APOL6  80830  apolipoprotein L, 6
Cards
GeneCards (Weizmann)APOL6
Ensembl (Hinxton)ENSG00000221963 [Gene_View]  chr22:36044424-36064456 [Contig_View]  APOL6 [Vega]
AceView (NCBI)APOL6
Genatlas (Paris)APOL6
SOURCE (Stanford)NM_030641
Genomic and cartography
GoldenPath (UCSC)APOL6  -  22q12.3   chr22:36044424-36064456 +  22q12.3   [Description]    (hg19-Feb_2009)
EnsemblAPOL6 - 22q12.3 [CytoView]
Mapping of homologs : NCBIAPOL6 [Mapview]
OMIM607256   
Gene and transcription
Genbank (Entrez)AJ227900 AK074645 AK095881 AK097266 AL834420
RefSeq transcript (SRS)NM_030641
RefSeq transcript (Entrez)NM_030641
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)APOL6
Cluster EST : UnigeneHs.257352 [ SRS ] Hs.257352 [ NCBI ]
CGAP (NCI)Hs.257352
Alternative Splicing : Fast-db (Paris)GSHG0019983
Alternative Splicing GalleryENSG00000221963
Gene ExpressionAPOL6 [ NCBI-GEO ]   APOL6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWW8 (SRS) Q9BWW8 (Uniprot)
NextProtQ9BWW8
With graphics : InterProQ9BWW8
Splice isoforms : SwissVarQ9BWW8(Swissvar)
Domains : Interpro (SRS)ApoL   
Domains : Interpro (EBI)ApoL   
Related proteins : CluSTrQ9BWW8
Domain families : Pfam (SRS)ApoL (PF05461)   
Domain families : Pfam (Sanger)ApoL (PF05461)   
Domain families : Pfam (NCBI)pfam05461   
DMDM80830
Blocks (Seattle)Q9BWW8
Human Protein AtlasENSG00000221963
HPRD06266
IPIIPI00032679   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWW8
IntAct (EBI)Q9BWW8
FunCoupENSG00000221963
REACTOMEAPOL6
Protein Interaction Database80830
BioGRIDAPOL6
InParanoidQ9BWW8
Interologous Interaction database Q9BWW8
IntegromeDBAPOL6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)APOL6
SNP (GeneSNP Utah)APOL6
SNP : HGBaseAPOL6
Genetic variants : HAPMAPAPOL6
Somatic Mutations in Cancer : COSMICAPOL6 
CONAN: Copy Number AnalysisAPOL6 
Mutations and Diseases : HGMDAPOL6
OMIM607256   
GENETests607256   
Disease Genetic AssociationAPOL6
Huge Navigator APOL6 [HugePedia]  APOL6 [HugeCancerGEM]
Genomic VariantsAPOL6  APOL6 [DGVbeta]
snp3D : Map Gene to Disease80830
General knowledge
Homologs : HomoloGeneAPOL6
Homology/Alignments : Family Browser (UCSC)APOL6
Phylogenetic Trees/Animal Genes : TreeFamAPOL6
Chemical/Protein Interactions : CTD80830
Chemical/Pharm GKB GenePA24909
Clinical trialAPOL6
Cancer Resource (Charite)ENSG00000221963
Ontology : AmiGOlipid transporter activity  extracellular region  cytoplasm  lipid transport  lipid binding  lipoprotein metabolic process  
Ontology : EGO-EBIlipid transporter activity  extracellular region  cytoplasm  lipid transport  lipid binding  lipoprotein metabolic process  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneAPOL6
iHOPAPOL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:47:54 CEST 2013
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