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APOLD1 (apolipoprotein L domain containing 1)

Identity

Alias_symbol (synonym)FLJ25138
DKFZP434F0318
Other aliasVERGE
HGNC (Hugo) APOLD1
LocusID (NCBI) 81575
Atlas_Id 60436
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 12725917 and ends at 12791465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOLD1 (12p13.1) / CDKN1B (12p13.1)APOLD1 (12p13.1) / CREBL2 (12p13.2)APOLD1 (12p13.1) / EEF1A1 (6q13)
HLA-E (6p21.33) / APOLD1 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOLD1   25268
Cards
Entrez_Gene (NCBI)APOLD1  81575  apolipoprotein L domain containing 1
AliasesVERGE
GeneCards (Weizmann)APOLD1
Ensembl hg19 (Hinxton)ENSG00000178878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178878 [Gene_View]  chr12:12725917-12791465 [Contig_View]  APOLD1 [Vega]
ICGC DataPortalENSG00000178878
TCGA cBioPortalAPOLD1
AceView (NCBI)APOLD1
Genatlas (Paris)APOLD1
WikiGenes81575
SOURCE (Princeton)APOLD1
Genetics Home Reference (NIH)APOLD1
Genomic and cartography
GoldenPath hg38 (UCSC)APOLD1  -     chr12:12725917-12791465 +  12p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOLD1  -     12p13.1   [Description]    (hg19-Feb_2009)
EnsemblAPOLD1 - 12p13.1 [CytoView hg19]  APOLD1 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIAPOLD1 [Mapview hg19]  APOLD1 [Mapview hg38]
OMIM612456   
Gene and transcription
Genbank (Entrez)AK024963 AK225176 AK314392 AL136783 AM393383
RefSeq transcript (Entrez)NM_001130415 NM_030817
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOLD1
Cluster EST : UnigeneHs.719938 [ NCBI ]
CGAP (NCI)Hs.719938
Alternative Splicing GalleryENSG00000178878
Gene ExpressionAPOLD1 [ NCBI-GEO ]   APOLD1 [ EBI - ARRAY_EXPRESS ]   APOLD1 [ SEEK ]   APOLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)APOLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81575
GTEX Portal (Tissue expression)APOLD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LR9
Splice isoforms : SwissVarQ96LR9
PhosPhoSitePlusQ96LR9
Domains : Interpro (EBI)ApoL   
Domain families : Pfam (Sanger)ApoL (PF05461)   
Domain families : Pfam (NCBI)pfam05461   
Conserved Domain (NCBI)APOLD1
DMDM Disease mutations81575
Blocks (Seattle)APOLD1
SuperfamilyQ96LR9
Human Protein AtlasENSG00000178878
Peptide AtlasQ96LR9
HPRD13153
IPIIPI00238434   IPI00477218   
Protein Interaction databases
DIP (DOE-UCLA)Q96LR9
IntAct (EBI)Q96LR9
FunCoupENSG00000178878
BioGRIDAPOLD1
STRING (EMBL)APOLD1
ZODIACAPOLD1
Ontologies - Pathways
QuickGOQ96LR9
Ontology : AmiGOangiogenesis  response to hypoxia  extracellular region  nucleoplasm  cytosol  plasma membrane  lipid transport  lipid binding  integral component of membrane  cell differentiation  endothelial cell activation  lipoprotein metabolic process  regulation of endothelial cell differentiation  
Ontology : EGO-EBIangiogenesis  response to hypoxia  extracellular region  nucleoplasm  cytosol  plasma membrane  lipid transport  lipid binding  integral component of membrane  cell differentiation  endothelial cell activation  lipoprotein metabolic process  regulation of endothelial cell differentiation  
NDEx NetworkAPOLD1
Atlas of Cancer Signalling NetworkAPOLD1
Wikipedia pathwaysAPOLD1
Orthology - Evolution
OrthoDB81575
GeneTree (enSembl)ENSG00000178878
Phylogenetic Trees/Animal Genes : TreeFamAPOLD1
HOVERGENQ96LR9
HOGENOMQ96LR9
Homologs : HomoloGeneAPOLD1
Homology/Alignments : Family Browser (UCSC)APOLD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOLD1
dbVarAPOLD1
ClinVarAPOLD1
1000_GenomesAPOLD1 
Exome Variant ServerAPOLD1
ExAC (Exome Aggregation Consortium)APOLD1 (select the gene name)
Genetic variants : HAPMAP81575
Genomic Variants (DGV)APOLD1 [DGVbeta]
DECIPHERAPOLD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOLD1 
Mutations
ICGC Data PortalAPOLD1 
TCGA Data PortalAPOLD1 
Broad Tumor PortalAPOLD1
OASIS PortalAPOLD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOLD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOLD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOLD1
DgiDB (Drug Gene Interaction Database)APOLD1
DoCM (Curated mutations)APOLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOLD1 (select a term)
intoGenAPOLD1
Cancer3DAPOLD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612456   
Orphanet
MedgenAPOLD1
Genetic Testing Registry APOLD1
NextProtQ96LR9 [Medical]
TSGene81575
GENETestsAPOLD1
Target ValidationAPOLD1
Huge Navigator APOLD1 [HugePedia]
snp3D : Map Gene to Disease81575
BioCentury BCIQAPOLD1
ClinGenAPOLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81575
Chemical/Pharm GKB GenePA143485306
Clinical trialAPOLD1
Miscellaneous
canSAR (ICR)APOLD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOLD1
EVEXAPOLD1
GoPubMedAPOLD1
iHOPAPOLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:36 CEST 2017

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