Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

APOM (apolipoprotein M)

Identity

Alias_symbol (synonym)ApoM
G3a
NG20
Other aliasHSPC336
apo-M
HGNC (Hugo) APOM
LocusID (NCBI) 55937
Atlas_Id 50402
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31620187 and ends at 31625987 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MYSM1 (1p32.1) / APOM (6p21.33)MYSM1 1p32.1 / APOM 6p21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOM   13916
Cards
Entrez_Gene (NCBI)APOM  55937  apolipoprotein M
AliasesG3a; HSPC336; NG20; apo-M
GeneCards (Weizmann)APOM
Ensembl hg19 (Hinxton)ENSG00000204444 [Gene_View]  chr6:31620187-31625987 [Contig_View]  APOM [Vega]
Ensembl hg38 (Hinxton)ENSG00000204444 [Gene_View]  chr6:31620187-31625987 [Contig_View]  APOM [Vega]
ICGC DataPortalENSG00000204444
TCGA cBioPortalAPOM
AceView (NCBI)APOM
Genatlas (Paris)APOM
WikiGenes55937
SOURCE (Princeton)APOM
Genetics Home Reference (NIH)APOM
Genomic and cartography
GoldenPath hg19 (UCSC)APOM  -     chr6:31620187-31625987 +  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)APOM  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblAPOM - 6p21.33 [CytoView hg19]  APOM - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIAPOM [Mapview hg19]  APOM [Mapview hg38]
OMIM606907   
Gene and transcription
Genbank (Entrez)AA476324 AA846749 AF118393 AF161454 AJ245434
RefSeq transcript (Entrez)NM_001256169 NM_019101
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)APOM
Cluster EST : UnigeneHs.534468 [ NCBI ]
CGAP (NCI)Hs.534468
Alternative Splicing GalleryENSG00000204444
Gene ExpressionAPOM [ NCBI-GEO ]   APOM [ EBI - ARRAY_EXPRESS ]   APOM [ SEEK ]   APOM [ MEM ]
Gene Expression Viewer (FireBrowse)APOM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55937
GTEX Portal (Tissue expression)APOM
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95445   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95445  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95445
Splice isoforms : SwissVarO95445
PhosPhoSitePlusO95445
Domains : Interpro (EBI)ApoM    Calycin-like   
Domain families : Pfam (Sanger)ApoM (PF11032)   
Domain families : Pfam (NCBI)pfam11032   
Conserved Domain (NCBI)APOM
DMDM Disease mutations55937
Blocks (Seattle)APOM
PDB (SRS)2WEW    2WEX    2YG2   
PDB (PDBSum)2WEW    2WEX    2YG2   
PDB (IMB)2WEW    2WEX    2YG2   
PDB (RSDB)2WEW    2WEX    2YG2   
Structural Biology KnowledgeBase2WEW    2WEX    2YG2   
SCOP (Structural Classification of Proteins)2WEW    2WEX    2YG2   
CATH (Classification of proteins structures)2WEW    2WEX    2YG2   
SuperfamilyO95445
Human Protein AtlasENSG00000204444
Peptide AtlasO95445
HPRD06068
IPIIPI00030739   IPI00645213   IPI00514397   
Protein Interaction databases
DIP (DOE-UCLA)O95445
IntAct (EBI)O95445
FunCoupENSG00000204444
BioGRIDAPOM
STRING (EMBL)APOM
ZODIACAPOM
Ontologies - Pathways
QuickGOO95445
Ontology : AmiGOretinoid metabolic process  lipid transporter activity  phospholipid binding  extracellular region  integral component of plasma membrane  response to glucose  antioxidant activity  cholesterol efflux  cholesterol efflux  very-low-density lipoprotein particle  low-density lipoprotein particle  high-density lipoprotein particle  discoidal high-density lipoprotein particle  spherical high-density lipoprotein particle  high-density lipoprotein particle remodeling  high-density lipoprotein particle assembly  high-density lipoprotein particle clearance  negative regulation of plasma lipoprotein particle oxidation  lipoprotein metabolic process  cholesterol homeostasis  reverse cholesterol transport  extracellular exosome  cellular oxidant detoxification  cellular oxidant detoxification  
Ontology : EGO-EBIretinoid metabolic process  lipid transporter activity  phospholipid binding  extracellular region  integral component of plasma membrane  response to glucose  antioxidant activity  cholesterol efflux  cholesterol efflux  very-low-density lipoprotein particle  low-density lipoprotein particle  high-density lipoprotein particle  discoidal high-density lipoprotein particle  spherical high-density lipoprotein particle  high-density lipoprotein particle remodeling  high-density lipoprotein particle assembly  high-density lipoprotein particle clearance  negative regulation of plasma lipoprotein particle oxidation  lipoprotein metabolic process  cholesterol homeostasis  reverse cholesterol transport  extracellular exosome  cellular oxidant detoxification  cellular oxidant detoxification  
NDEx NetworkAPOM
Atlas of Cancer Signalling NetworkAPOM
Wikipedia pathwaysAPOM
Orthology - Evolution
OrthoDB55937
GeneTree (enSembl)ENSG00000204444
Phylogenetic Trees/Animal Genes : TreeFamAPOM
HOVERGENO95445
HOGENOMO95445
Homologs : HomoloGeneAPOM
Homology/Alignments : Family Browser (UCSC)APOM
Gene fusions - Rearrangements
Fusion : MitelmanMYSM1/APOM [1p32.1/6p21.33]  [t(1;6)(p32;p21)]  
Fusion: TCGAMYSM1 1p32.1 APOM 6p21.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOM
dbVarAPOM
ClinVarAPOM
1000_GenomesAPOM 
Exome Variant ServerAPOM
ExAC (Exome Aggregation Consortium)APOM (select the gene name)
Genetic variants : HAPMAP55937
Genomic Variants (DGV)APOM [DGVbeta]
DECIPHER (Syndromes)6:31620187-31625987  ENSG00000204444
CONAN: Copy Number AnalysisAPOM 
Mutations
ICGC Data PortalAPOM 
TCGA Data PortalAPOM 
Broad Tumor PortalAPOM
OASIS PortalAPOM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch APOM
DgiDB (Drug Gene Interaction Database)APOM
DoCM (Curated mutations)APOM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOM (select a term)
intoGenAPOM
Cancer3DAPOM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606907   
Orphanet
MedgenAPOM
Genetic Testing Registry APOM
NextProtO95445 [Medical]
TSGene55937
GENETestsAPOM
Huge Navigator APOM [HugePedia]
snp3D : Map Gene to Disease55937
BioCentury BCIQAPOM
ClinGenAPOM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55937
Chemical/Pharm GKB GenePA38370
Clinical trialAPOM
Miscellaneous
canSAR (ICR)APOM (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOM
EVEXAPOM
GoPubMedAPOM
iHOPAPOM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:56:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.