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APOOL (apolipoprotein O like)

Identity

Alias_namesCXorf33
FAM121A
chromosome X open reading frame 33
family with sequence similarity 121A
Alias_symbol (synonym)UNQ8193
AAIR8193
Mic27
Other alias
HGNC (Hugo) APOOL
LocusID (NCBI) 139322
Atlas_Id 54132
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 85003892 and ends at 85093317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOOL (Xq21.1) / DCAF8 (1q23.2)TNS3 (7p12.3) / APOOL (Xq21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APOOL   24009
Cards
Entrez_Gene (NCBI)APOOL  139322  apolipoprotein O like
AliasesCXorf33; FAM121A; Mic27; UNQ8193
GeneCards (Weizmann)APOOL
Ensembl hg19 (Hinxton)ENSG00000155008 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155008 [Gene_View]  chrX:85003892-85093317 [Contig_View]  APOOL [Vega]
ICGC DataPortalENSG00000155008
TCGA cBioPortalAPOOL
AceView (NCBI)APOOL
Genatlas (Paris)APOOL
WikiGenes139322
SOURCE (Princeton)APOOL
Genetics Home Reference (NIH)APOOL
Genomic and cartography
GoldenPath hg38 (UCSC)APOOL  -     chrX:85003892-85093317 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APOOL  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblAPOOL - Xq21.1 [CytoView hg19]  APOOL - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIAPOOL [Mapview hg19]  APOOL [Mapview hg38]
OMIM300955   
Gene and transcription
Genbank (Entrez)AK096909 AK130506 AY358193 BC107095 BC107096
RefSeq transcript (Entrez)NM_198450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APOOL
Cluster EST : UnigeneHs.729014 [ NCBI ]
CGAP (NCI)Hs.729014
Alternative Splicing GalleryENSG00000155008
Gene ExpressionAPOOL [ NCBI-GEO ]   APOOL [ EBI - ARRAY_EXPRESS ]   APOOL [ SEEK ]   APOOL [ MEM ]
Gene Expression Viewer (FireBrowse)APOOL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139322
GTEX Portal (Tissue expression)APOOL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXV4
Splice isoforms : SwissVarQ6UXV4
PhosPhoSitePlusQ6UXV4
Domains : Interpro (EBI)MIC26/MIC27    MIC26/MIC27_animal   
Domain families : Pfam (Sanger)ApoO (PF09769)   
Domain families : Pfam (NCBI)pfam09769   
Conserved Domain (NCBI)APOOL
DMDM Disease mutations139322
Blocks (Seattle)APOOL
SuperfamilyQ6UXV4
Human Protein AtlasENSG00000155008
Peptide AtlasQ6UXV4
HPRD16775
IPIIPI00394809   IPI00942210   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXV4
IntAct (EBI)Q6UXV4
FunCoupENSG00000155008
BioGRIDAPOOL
STRING (EMBL)APOOL
ZODIACAPOOL
Ontologies - Pathways
QuickGOQ6UXV4
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  mitochondrion  platelet alpha granule lumen  cristae formation  MICOS complex  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  mitochondrion  platelet alpha granule lumen  cristae formation  MICOS complex  
NDEx NetworkAPOOL
Atlas of Cancer Signalling NetworkAPOOL
Wikipedia pathwaysAPOOL
Orthology - Evolution
OrthoDB139322
GeneTree (enSembl)ENSG00000155008
Phylogenetic Trees/Animal Genes : TreeFamAPOOL
HOVERGENQ6UXV4
HOGENOMQ6UXV4
Homologs : HomoloGeneAPOOL
Homology/Alignments : Family Browser (UCSC)APOOL
Gene fusions - Rearrangements
Fusion : MitelmanAPOOL/DCAF8 [Xq21.1/1q23.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAPOOL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)APOOL
dbVarAPOOL
ClinVarAPOOL
1000_GenomesAPOOL 
Exome Variant ServerAPOOL
ExAC (Exome Aggregation Consortium)APOOL (select the gene name)
Genetic variants : HAPMAP139322
Genomic Variants (DGV)APOOL [DGVbeta]
DECIPHERAPOOL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAPOOL 
Mutations
ICGC Data PortalAPOOL 
TCGA Data PortalAPOOL 
Broad Tumor PortalAPOOL
OASIS PortalAPOOL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAPOOL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAPOOL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch APOOL
DgiDB (Drug Gene Interaction Database)APOOL
DoCM (Curated mutations)APOOL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)APOOL (select a term)
intoGenAPOOL
Cancer3DAPOOL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300955   
Orphanet
MedgenAPOOL
Genetic Testing Registry APOOL
NextProtQ6UXV4 [Medical]
TSGene139322
GENETestsAPOOL
Target ValidationAPOOL
Huge Navigator APOOL [HugePedia]
snp3D : Map Gene to Disease139322
BioCentury BCIQAPOOL
ClinGenAPOOL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139322
Chemical/Pharm GKB GenePA162376732
Clinical trialAPOOL
Miscellaneous
canSAR (ICR)APOOL (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPOOL
EVEXAPOOL
GoPubMedAPOOL
iHOPAPOOL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:55:12 CEST 2017

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