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APTR (Alu-mediated CDKN1A/p21 transcriptional regulator)

Identity

Alias_namesRSBN1L-AS1
RSBN1L antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) APTR
LocusID (NCBI) 100505854
Atlas_Id 60439
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 77657660 and ends at 77696265 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)APTR   44173
Cards
Entrez_Gene (NCBI)APTR  100505854  Alu-mediated CDKN1A/p21 transcriptional regulator
AliasesRSBN1L-AS1
GeneCards (Weizmann)APTR
Ensembl hg19 (Hinxton)ENSG00000214293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214293 [Gene_View]  ENSG00000214293 [Sequence]  chr7:77657660-77696265 [Contig_View]  APTR [Vega]
ICGC DataPortalENSG00000214293
TCGA cBioPortalAPTR
AceView (NCBI)APTR
Genatlas (Paris)APTR
WikiGenes100505854
SOURCE (Princeton)APTR
Genetics Home Reference (NIH)APTR
Genomic and cartography
GoldenPath hg38 (UCSC)APTR  -     chr7:77657660-77696265 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)APTR  -     7q11.23   [Description]    (hg19-Feb_2009)
GoldenPathAPTR - 7q11.23 [CytoView hg19]  APTR - 7q11.23 [CytoView hg38]
ImmunoBaseENSG00000214293
Mapping of homologs : NCBIAPTR [Mapview hg19]  APTR [Mapview hg38]
OMIM616048   
Gene and transcription
Genbank (Entrez)AF290475 BC014375 BC037783
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)APTR
Alternative Splicing GalleryENSG00000214293
Gene ExpressionAPTR [ NCBI-GEO ]   APTR [ EBI - ARRAY_EXPRESS ]   APTR [ SEEK ]   APTR [ MEM ]
Gene Expression Viewer (FireBrowse)APTR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505854
GTEX Portal (Tissue expression)APTR
Human Protein AtlasENSG00000214293-APTR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)APTR
DMDM Disease mutations100505854
Blocks (Seattle)APTR
Human Protein Atlas [tissue]ENSG00000214293-APTR [tissue]
Protein Interaction databases
FunCoupENSG00000214293
BioGRIDAPTR
STRING (EMBL)APTR
ZODIACAPTR
Ontologies - Pathways
Huge Navigator APTR [HugePedia]
snp3D : Map Gene to Disease100505854
BioCentury BCIQAPTR
ClinGenAPTR
Clinical trials, drugs, therapy
Protein Interactions : CTD100505854
Clinical trialAPTR
Miscellaneous
canSAR (ICR)APTR (select the gene name)
HarmonizomeAPTR
DataMed IndexAPTR
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAPTR
EVEXAPTR
GoPubMedAPTR
iHOPAPTR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Jun 30 19:34:35 CEST 2020

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