Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AQP6 (aquaporin 6)

Identity

Other aliasAQP2L
KID
HGNC (Hugo) AQP6
LocusID (NCBI) 363
Atlas_Id 56674
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49972837 and ends at 49977139 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AQP6   639
Cards
Entrez_Gene (NCBI)AQP6  363  aquaporin 6
AliasesAQP2L; KID
GeneCards (Weizmann)AQP6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:49972837-49977139 [Contig_View]  AQP6 [Vega]
TCGA cBioPortalAQP6
AceView (NCBI)AQP6
Genatlas (Paris)AQP6
WikiGenes363
SOURCE (Princeton)AQP6
Genetics Home Reference (NIH)AQP6
Genomic and cartography
GoldenPath hg38 (UCSC)AQP6  -     chr12:49972837-49977139 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AQP6  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblAQP6 - 12q13.12 [CytoView hg19]  AQP6 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIAQP6 [Mapview hg19]  AQP6 [Mapview hg38]
OMIM601383   
Gene and transcription
Genbank (Entrez)AL137716 BC065275 BC156043 BC156929 U48408
RefSeq transcript (Entrez)NM_001652 NM_053286
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AQP6
Cluster EST : UnigeneHs.54505 [ NCBI ]
CGAP (NCI)Hs.54505
Gene ExpressionAQP6 [ NCBI-GEO ]   AQP6 [ EBI - ARRAY_EXPRESS ]   AQP6 [ SEEK ]   AQP6 [ MEM ]
Gene Expression Viewer (FireBrowse)AQP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)363
GTEX Portal (Tissue expression)AQP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13520   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13520  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13520
Splice isoforms : SwissVarQ13520
PhosPhoSitePlusQ13520
Domaine pattern : Prosite (Expaxy)MIP (PS00221)   
Domains : Interpro (EBI)Aquaporin-like    Aquaporin_6    Aquaporin_transptr    MIP    MIP_CS   
Domain families : Pfam (Sanger)MIP (PF00230)   
Domain families : Pfam (NCBI)pfam00230   
Conserved Domain (NCBI)AQP6
DMDM Disease mutations363
Blocks (Seattle)AQP6
PDB (SRS)1S6E   
PDB (PDBSum)1S6E   
PDB (IMB)1S6E   
PDB (RSDB)1S6E   
Structural Biology KnowledgeBase1S6E   
SCOP (Structural Classification of Proteins)1S6E   
CATH (Classification of proteins structures)1S6E   
SuperfamilyQ13520
Peptide AtlasQ13520
IPIIPI00013717   IPI00040626   IPI01022313   
Protein Interaction databases
DIP (DOE-UCLA)Q13520
IntAct (EBI)Q13520
BioGRIDAQP6
STRING (EMBL)AQP6
ZODIACAQP6
Ontologies - Pathways
QuickGOQ13520
Ontology : AmiGOanion channel activity  integral component of plasma membrane  transport  water transport  excretion  nitrate transmembrane transporter activity  water channel activity  nitrate transport  apical plasma membrane  transport vesicle membrane  ion transmembrane transport  odontogenesis  anion transmembrane transport  
Ontology : EGO-EBIanion channel activity  integral component of plasma membrane  transport  water transport  excretion  nitrate transmembrane transporter activity  water channel activity  nitrate transport  apical plasma membrane  transport vesicle membrane  ion transmembrane transport  odontogenesis  anion transmembrane transport  
NDEx NetworkAQP6
Atlas of Cancer Signalling NetworkAQP6
Wikipedia pathwaysAQP6
Orthology - Evolution
OrthoDB363
Phylogenetic Trees/Animal Genes : TreeFamAQP6
HOVERGENQ13520
HOGENOMQ13520
Homologs : HomoloGeneAQP6
Homology/Alignments : Family Browser (UCSC)AQP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAQP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AQP6
dbVarAQP6
ClinVarAQP6
1000_GenomesAQP6 
Exome Variant ServerAQP6
ExAC (Exome Aggregation Consortium)AQP6 (select the gene name)
Genetic variants : HAPMAP363
Genomic Variants (DGV)AQP6 [DGVbeta]
DECIPHERAQP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAQP6 
Mutations
ICGC Data PortalAQP6 
TCGA Data PortalAQP6 
Broad Tumor PortalAQP6
OASIS PortalAQP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAQP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAQP6
BioMutasearch AQP6
DgiDB (Drug Gene Interaction Database)AQP6
DoCM (Curated mutations)AQP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AQP6 (select a term)
intoGenAQP6
Cancer3DAQP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601383   
Orphanet
MedgenAQP6
Genetic Testing Registry AQP6
NextProtQ13520 [Medical]
TSGene363
GENETestsAQP6
Target ValidationAQP6
Huge Navigator AQP6 [HugePedia]
snp3D : Map Gene to Disease363
BioCentury BCIQAQP6
ClinGenAQP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD363
Chemical/Pharm GKB GenePA24924
Clinical trialAQP6
Miscellaneous
canSAR (ICR)AQP6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAQP6
EVEXAQP6
GoPubMedAQP6
iHOPAQP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:47:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.