Atlas of Genetics and Cytogenetics in Oncology and Haematology

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AQP9 (aquaporin 9)

Identity

Other namesAQP-9
HsT17287
SSC1
HGNC (Hugo) AQP9
LocusID (NCBI) 366
Location 15q21.3
Location_base_pair Starts at 58430408 and ends at 58478110 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AQP9   643
Entrez_Gene (NCBI)AQP9  366  aquaporin 9
Cards
GeneCards (Weizmann)AQP9
Ensembl (Hinxton)ENSG00000103569 [Gene_View]  chr15:58430408-58478110 [Contig_View]  AQP9 [Vega]
AceView (NCBI)AQP9
Genatlas (Paris)AQP9
SOURCE (Stanford)NM_020980
Genomic and cartography
GoldenPath (UCSC)AQP9  -  15q21.3   chr15:58430408-58478110 +  15q21.3   [Description]    (hg19-Feb_2009)
EnsemblAQP9 - 15q21.3 [CytoView]
Mapping of homologs : NCBIAQP9 [Mapview]
OMIM602914   
Gene and transcription
Genbank (Entrez)AB008775 AF016495 AK300055 AK313214 BC026258
RefSeq transcript (SRS)NM_020980
RefSeq transcript (Entrez)NM_020980
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NG_011975 NT_010194 NW_001838218 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_011975 NT_010194 NW_001838218 NW_004078084
Consensus coding sequences : CCDS (NCBI)AQP9
Cluster EST : UnigeneHs.104624 [ SRS ] Hs.104624 [ NCBI ]
CGAP (NCI)Hs.104624
Alternative Splicing : Fast-db (Paris)GSHG0009895
Alternative Splicing GalleryENSG00000103569
Gene ExpressionAQP9 [ NCBI-GEO ]   AQP9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43315 (SRS) O43315 (Uniprot)
NextProtO43315
With graphics : InterProO43315
Splice isoforms : SwissVarO43315(Swissvar)
Domaine pattern : Prosite (SRS)MIP (PS00221)   
Domaine pattern : Prosite (Expaxy)MIP (PS00221)   
Domains : Interpro (SRS)Aquaporin-like    Aquaporin_9    MIP    MIP_CS   
Domains : Interpro (EBI)Aquaporin-like    Aquaporin_9    MIP    MIP_CS   
Related proteins : CluSTrO43315
Domain families : Pfam (SRS)MIP (PF00230)   
Domain families : Pfam (Sanger)MIP (PF00230)   
Domain families : Pfam (NCBI)pfam00230   
DMDM366
Blocks (Seattle)O43315
Human Protein AtlasENSG00000103569
HPRD04223
IPIIPI00011954   
Protein Interaction databases
DIP (DOE-UCLA)O43315
IntAct (EBI)O43315
FunCoupENSG00000103569
REACTOMEAQP9
Protein Interaction Database366
BioGRIDAQP9
InParanoidO43315
Interologous Interaction database O43315
IntegromeDBAQP9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AQP9
SNP (GeneSNP Utah)AQP9
SNP : HGBaseAQP9
Genetic variants : HAPMAPAQP9
Somatic Mutations in Cancer : COSMICAQP9 
CONAN: Copy Number AnalysisAQP9 
Mutations and Diseases : HGMDAQP9
OMIM602914   
GENETests602914   
Disease Genetic AssociationAQP9
Huge Navigator AQP9 [HugePedia]  AQP9 [HugeCancerGEM]
Genomic VariantsAQP9  AQP9 [DGVbeta]
snp3D : Map Gene to Disease366
General knowledge
Homologs : HomoloGeneAQP9
Homology/Alignments : Family Browser (UCSC)AQP9
Phylogenetic Trees/Animal Genes : TreeFamAQP9
Chemical/Protein Interactions : CTD366
Chemical/Pharm GKB GenePA24927
Clinical trialAQP9
Cancer Resource (Charite)ENSG00000103569
Ontology : AmiGOamine transmembrane transporter activity  purine nucleobase transmembrane transporter activity  pyrimidine nucleobase transmembrane transporter activity  water transmembrane transporter activity  plasma membrane  integral to plasma membrane  transport  water transport  water transport  purine nucleobase transport  immune response  response to osmotic stress  excretion  metabolic process  response to organic substance  polyol transmembrane transporter activity  water channel activity  glycerol channel activity  porin activity  canalicular bile acid transport  polyol transport  glycerol transport  amine transport  pyrimidine nucleobase transport  integral to membrane  basolateral plasma membrane  water homeostasis  intracellular membrane-bounded organelle  response to mercury ion  carboxylic acid transport  carboxylic acid transmembrane transporter activity  transmembrane transport  cellular response to cAMP  pyrimidine-containing compound transmembrane transport  
Ontology : EGO-EBIamine transmembrane transporter activity  purine nucleobase transmembrane transporter activity  pyrimidine nucleobase transmembrane transporter activity  water transmembrane transporter activity  plasma membrane  integral to plasma membrane  transport  water transport  water transport  purine nucleobase transport  immune response  response to osmotic stress  excretion  metabolic process  response to organic substance  polyol transmembrane transporter activity  water channel activity  glycerol channel activity  porin activity  canalicular bile acid transport  polyol transport  glycerol transport  amine transport  pyrimidine nucleobase transport  integral to membrane  basolateral plasma membrane  water homeostasis  intracellular membrane-bounded organelle  response to mercury ion  carboxylic acid transport  carboxylic acid transmembrane transporter activity  transmembrane transport  cellular response to cAMP  pyrimidine-containing compound transmembrane transport  
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
PubGeneAQP9
iHOPAQP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:17 CEST 2013
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