Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AQP9 (aquaporin 9)

Identity

Alias_symbol (synonym)SSC1
HsT17287
Other aliasAQP-9
T17287
HGNC (Hugo) AQP9
LocusID (NCBI) 366
Atlas_Id 43685
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 58430395 and ends at 58478110 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AQP9   643
Cards
Entrez_Gene (NCBI)AQP9  366  aquaporin 9
AliasesAQP-9; HsT17287; SSC1; T17287
GeneCards (Weizmann)AQP9
Ensembl hg19 (Hinxton)ENSG00000103569 [Gene_View]  chr15:58430395-58478110 [Contig_View]  AQP9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103569 [Gene_View]  chr15:58430395-58478110 [Contig_View]  AQP9 [Vega]
ICGC DataPortalENSG00000103569
TCGA cBioPortalAQP9
AceView (NCBI)AQP9
Genatlas (Paris)AQP9
WikiGenes366
SOURCE (Princeton)AQP9
Genetics Home Reference (NIH)AQP9
Genomic and cartography
GoldenPath hg19 (UCSC)AQP9  -     chr15:58430395-58478110 +  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AQP9  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblAQP9 - 15q21.3 [CytoView hg19]  AQP9 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIAQP9 [Mapview hg19]  AQP9 [Mapview hg38]
OMIM602914   
Gene and transcription
Genbank (Entrez)AB008775 AF016495 AK300055 AK313214 BC026258
RefSeq transcript (Entrez)NM_001320635 NM_001320636 NM_020980
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_011975 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)AQP9
Cluster EST : UnigeneHs.104624 [ NCBI ]
CGAP (NCI)Hs.104624
Alternative Splicing GalleryENSG00000103569
Gene ExpressionAQP9 [ NCBI-GEO ]   AQP9 [ EBI - ARRAY_EXPRESS ]   AQP9 [ SEEK ]   AQP9 [ MEM ]
Gene Expression Viewer (FireBrowse)AQP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)366
GTEX Portal (Tissue expression)AQP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43315   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43315  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43315
Splice isoforms : SwissVarO43315
PhosPhoSitePlusO43315
Domaine pattern : Prosite (Expaxy)MIP (PS00221)   
Domains : Interpro (EBI)Aquaporin-like    Aquaporin_9    MIP    MIP_CS   
Domain families : Pfam (Sanger)MIP (PF00230)   
Domain families : Pfam (NCBI)pfam00230   
Conserved Domain (NCBI)AQP9
DMDM Disease mutations366
Blocks (Seattle)AQP9
SuperfamilyO43315
Human Protein AtlasENSG00000103569
Peptide AtlasO43315
HPRD04223
IPIIPI00011954   
Protein Interaction databases
DIP (DOE-UCLA)O43315
IntAct (EBI)O43315
FunCoupENSG00000103569
BioGRIDAQP9
STRING (EMBL)AQP9
ZODIACAQP9
Ontologies - Pathways
QuickGOO43315
Ontology : AmiGOamine transmembrane transporter activity  purine nucleobase transmembrane transporter activity  pyrimidine nucleobase transmembrane transporter activity  water transmembrane transporter activity  plasma membrane  integral component of plasma membrane  transport  water transport  water transport  purine nucleobase transport  immune response  response to osmotic stress  excretion  metabolic process  cellular water homeostasis  response to organic substance  polyol transmembrane transporter activity  urea transmembrane transporter activity  water channel activity  water channel activity  glycerol channel activity  glycerol channel activity  urea channel activity  porin activity  canalicular bile acid transport  polyol transport  glycerol transport  amine transport  pyrimidine nucleobase transport  integral component of membrane  basolateral plasma membrane  water homeostasis  intracellular membrane-bounded organelle  response to mercury ion  carboxylic acid transport  carboxylic acid transmembrane transporter activity  cellular response to cAMP  urea transmembrane transport  pyrimidine-containing compound transmembrane transport  purine nucleobase transmembrane transport  carboxylic acid transmembrane transport  
Ontology : EGO-EBIamine transmembrane transporter activity  purine nucleobase transmembrane transporter activity  pyrimidine nucleobase transmembrane transporter activity  water transmembrane transporter activity  plasma membrane  integral component of plasma membrane  transport  water transport  water transport  purine nucleobase transport  immune response  response to osmotic stress  excretion  metabolic process  cellular water homeostasis  response to organic substance  polyol transmembrane transporter activity  urea transmembrane transporter activity  water channel activity  water channel activity  glycerol channel activity  glycerol channel activity  urea channel activity  porin activity  canalicular bile acid transport  polyol transport  glycerol transport  amine transport  pyrimidine nucleobase transport  integral component of membrane  basolateral plasma membrane  water homeostasis  intracellular membrane-bounded organelle  response to mercury ion  carboxylic acid transport  carboxylic acid transmembrane transporter activity  cellular response to cAMP  urea transmembrane transport  pyrimidine-containing compound transmembrane transport  purine nucleobase transmembrane transport  carboxylic acid transmembrane transport  
Pathways : KEGGBile secretion   
NDEx NetworkAQP9
Atlas of Cancer Signalling NetworkAQP9
Wikipedia pathwaysAQP9
Orthology - Evolution
OrthoDB366
GeneTree (enSembl)ENSG00000103569
Phylogenetic Trees/Animal Genes : TreeFamAQP9
HOVERGENO43315
HOGENOMO43315
Homologs : HomoloGeneAQP9
Homology/Alignments : Family Browser (UCSC)AQP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAQP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AQP9
dbVarAQP9
ClinVarAQP9
1000_GenomesAQP9 
Exome Variant ServerAQP9
ExAC (Exome Aggregation Consortium)AQP9 (select the gene name)
Genetic variants : HAPMAP366
Genomic Variants (DGV)AQP9 [DGVbeta]
DECIPHER (Syndromes)15:58430395-58478110  ENSG00000103569
CONAN: Copy Number AnalysisAQP9 
Mutations
ICGC Data PortalAQP9 
TCGA Data PortalAQP9 
Broad Tumor PortalAQP9
OASIS PortalAQP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAQP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAQP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)The Globin Gene Server
BioMutasearch AQP9
DgiDB (Drug Gene Interaction Database)AQP9
DoCM (Curated mutations)AQP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AQP9 (select a term)
intoGenAQP9
Cancer3DAQP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602914   
Orphanet
MedgenAQP9
Genetic Testing Registry AQP9
NextProtO43315 [Medical]
TSGene366
GENETestsAQP9
Huge Navigator AQP9 [HugePedia]
snp3D : Map Gene to Disease366
BioCentury BCIQAQP9
ClinGenAQP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD366
Chemical/Pharm GKB GenePA24927
Clinical trialAQP9
Miscellaneous
canSAR (ICR)AQP9 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAQP9
EVEXAQP9
GoPubMedAQP9
iHOPAQP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:56:14 CET 2017

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