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AQR (aquarius intron-binding spliceosomal factor)

Identity

Alias_namesaquarius homolog (mouse)
Alias_symbol (synonym)KIAA0560
fSAP164
IBP160
Other alias
HGNC (Hugo) AQR
LocusID (NCBI) 9716
Atlas_Id 55464
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34856351 and ends at 34969794 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AQR (15q14) / FARSB (2q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AQR   29513
Cards
Entrez_Gene (NCBI)AQR  9716  aquarius intron-binding spliceosomal factor
AliasesIBP160; fSAP164
GeneCards (Weizmann)AQR
Ensembl hg19 (Hinxton)ENSG00000021776 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000021776 [Gene_View]  chr15:34856351-34969794 [Contig_View]  AQR [Vega]
ICGC DataPortalENSG00000021776
TCGA cBioPortalAQR
AceView (NCBI)AQR
Genatlas (Paris)AQR
WikiGenes9716
SOURCE (Princeton)AQR
Genetics Home Reference (NIH)AQR
Genomic and cartography
GoldenPath hg38 (UCSC)AQR  -     chr15:34856351-34969794 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AQR  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblAQR - 15q14 [CytoView hg19]  AQR - 15q14 [CytoView hg38]
Mapping of homologs : NCBIAQR [Mapview hg19]  AQR [Mapview hg38]
OMIM610548   
Gene and transcription
Genbank (Entrez)AB011132 AK001173 AK291615 AK315815 AL703893
RefSeq transcript (Entrez)NM_014691
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AQR
Cluster EST : UnigeneHs.510958 [ NCBI ]
CGAP (NCI)Hs.510958
Alternative Splicing GalleryENSG00000021776
Gene ExpressionAQR [ NCBI-GEO ]   AQR [ EBI - ARRAY_EXPRESS ]   AQR [ SEEK ]   AQR [ MEM ]
Gene Expression Viewer (FireBrowse)AQR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9716
GTEX Portal (Tissue expression)AQR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60306   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60306  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60306
Splice isoforms : SwissVarO60306
PhosPhoSitePlusO60306
Domains : Interpro (EBI)Aquarius_N    CWF11_fam    P-loop_NTPase   
Domain families : Pfam (Sanger)Aquarius_N (PF16399)   
Domain families : Pfam (NCBI)pfam16399   
Conserved Domain (NCBI)AQR
DMDM Disease mutations9716
Blocks (Seattle)AQR
PDB (SRS)4PJ3   
PDB (PDBSum)4PJ3   
PDB (IMB)4PJ3   
PDB (RSDB)4PJ3   
Structural Biology KnowledgeBase4PJ3   
SCOP (Structural Classification of Proteins)4PJ3   
CATH (Classification of proteins structures)4PJ3   
SuperfamilyO60306
Human Protein AtlasENSG00000021776
Peptide AtlasO60306
HPRD12468
IPIIPI00796835   IPI00297572   
Protein Interaction databases
DIP (DOE-UCLA)O60306
IntAct (EBI)O60306
FunCoupENSG00000021776
BioGRIDAQR
STRING (EMBL)AQR
ZODIACAQR
Ontologies - Pathways
QuickGOO60306
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  transcription-coupled nucleotide-excision repair  membrane  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  transcription-coupled nucleotide-excision repair  membrane  catalytic step 2 spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkAQR
Atlas of Cancer Signalling NetworkAQR
Wikipedia pathwaysAQR
Orthology - Evolution
OrthoDB9716
GeneTree (enSembl)ENSG00000021776
Phylogenetic Trees/Animal Genes : TreeFamAQR
HOVERGENO60306
HOGENOMO60306
Homologs : HomoloGeneAQR
Homology/Alignments : Family Browser (UCSC)AQR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAQR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AQR
dbVarAQR
ClinVarAQR
1000_GenomesAQR 
Exome Variant ServerAQR
ExAC (Exome Aggregation Consortium)AQR (select the gene name)
Genetic variants : HAPMAP9716
Genomic Variants (DGV)AQR [DGVbeta]
DECIPHERAQR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAQR 
Mutations
ICGC Data PortalAQR 
TCGA Data PortalAQR 
Broad Tumor PortalAQR
OASIS PortalAQR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAQR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAQR
intOGen PortalAQR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AQR
DgiDB (Drug Gene Interaction Database)AQR
DoCM (Curated mutations)AQR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AQR (select a term)
intoGenAQR
Cancer3DAQR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610548   
Orphanet
MedgenAQR
Genetic Testing Registry AQR
NextProtO60306 [Medical]
TSGene9716
GENETestsAQR
Huge Navigator AQR [HugePedia]
snp3D : Map Gene to Disease9716
BioCentury BCIQAQR
ClinGenAQR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9716
Chemical/Pharm GKB GenePA134869224
Clinical trialAQR
Miscellaneous
canSAR (ICR)AQR (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAQR
EVEXAQR
GoPubMedAQR
iHOPAQR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:25 CEST 2017

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