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ARAFP2 (ARAF pseudogene 2)

Identity

Alias_namesARAF2
ARAFPS
ARAF2P
v-raf murine sarcoma 3611 viral oncogene homolog pseudogene
v-raf murine sarcoma 3611 viral oncogene homolog 2, pseudogene
Alias_symbol (synonym)PKS1
Other alias
HGNC (Hugo) ARAFP2
LocusID (NCBI) 644000
Atlas_Id 687
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 63404376 and ends at 63405418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ARAFP2   647
Cards
Entrez_Gene (NCBI)ARAFP2  644000  ARAF pseudogene 2
AliasesARAF2; ARAF2P; ARAFPS; PKS1
GeneCards (Weizmann)ARAFP2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:63404376-63405418 [Contig_View]  ARAFP2 [Vega]
TCGA cBioPortalARAFP2
AceView (NCBI)ARAFP2
Genatlas (Paris)ARAFP2
WikiGenes644000
SOURCE (Princeton)ARAFP2
Genetics Home Reference (NIH)ARAFP2
Genomic and cartography
GoldenPath hg38 (UCSC)ARAFP2  -     chr7:63404376-63405418 -  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARAFP2  -     7q11.21   [Description]    (hg19-Feb_2009)
EnsemblARAFP2 - 7q11.21 [CytoView hg19]  ARAFP2 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIARAFP2 [Mapview hg19]  ARAFP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033982
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARAFP2
Gene ExpressionARAFP2 [ NCBI-GEO ]   ARAFP2 [ EBI - ARRAY_EXPRESS ]   ARAFP2 [ SEEK ]   ARAFP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARAFP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)644000
GTEX Portal (Tissue expression)ARAFP2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARAFP2
DMDM Disease mutations644000
Blocks (Seattle)ARAFP2
Protein Interaction databases
BioGRIDARAFP2
STRING (EMBL)ARAFP2
ZODIACARAFP2
Ontologies - Pathways
Huge Navigator ARAFP2 [HugePedia]
snp3D : Map Gene to Disease644000
BioCentury BCIQARAFP2
ClinGenARAFP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644000
Clinical trialARAFP2
Miscellaneous
canSAR (ICR)ARAFP2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARAFP2
EVEXARAFP2
GoPubMedARAFP2
iHOPARAFP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:03:28 CET 2017

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