Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARCN1 (archain 1)

Identity

Alias_namesCOPD
coatomer protein complex
Other aliasSRMMD
HGNC (Hugo) ARCN1
LocusID (NCBI) 372
Atlas_Id 689
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118572387 and ends at 118603032 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARCN1 (11q23.3) / JAKMIP2 (5q32)CADM1 (11q23.3) / ARCN1 (11q23.3)MBD2 (18q21.2) / ARCN1 (11q23.3)
SLC35E3 (12q15) / ARCN1 (11q23.3)CADM1 11q23.3 / ARCN1 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARCN1   649
Cards
Entrez_Gene (NCBI)ARCN1  372  archain 1
AliasesCOPD; SRMMD
GeneCards (Weizmann)ARCN1
Ensembl hg19 (Hinxton)ENSG00000095139 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095139 [Gene_View]  chr11:118572387-118603032 [Contig_View]  ARCN1 [Vega]
ICGC DataPortalENSG00000095139
TCGA cBioPortalARCN1
AceView (NCBI)ARCN1
Genatlas (Paris)ARCN1
WikiGenes372
SOURCE (Princeton)ARCN1
Genetics Home Reference (NIH)ARCN1
Genomic and cartography
GoldenPath hg38 (UCSC)ARCN1  -     chr11:118572387-118603032 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARCN1  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblARCN1 - 11q23.3 [CytoView hg19]  ARCN1 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIARCN1 [Mapview hg19]  ARCN1 [Mapview hg38]
OMIM600820   617164   
Gene and transcription
Genbank (Entrez)AA856562 AK304019 AK312298 AU125652 BC064936
RefSeq transcript (Entrez)NM_001142281 NM_001655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARCN1
Cluster EST : UnigeneHs.33642 [ NCBI ]
CGAP (NCI)Hs.33642
Alternative Splicing GalleryENSG00000095139
Gene ExpressionARCN1 [ NCBI-GEO ]   ARCN1 [ EBI - ARRAY_EXPRESS ]   ARCN1 [ SEEK ]   ARCN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARCN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)372
GTEX Portal (Tissue expression)ARCN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48444   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48444  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48444
Splice isoforms : SwissVarP48444
PhosPhoSitePlusP48444
Domaine pattern : Prosite (Expaxy)MHD (PS51072)   
Domains : Interpro (EBI)AP_mu_sigma_su    Coatomer_dsu    Longin-like_dom    MHD   
Domain families : Pfam (Sanger)Adap_comp_sub (PF00928)    Clat_adaptor_s (PF01217)   
Domain families : Pfam (NCBI)pfam00928    pfam01217   
Conserved Domain (NCBI)ARCN1
DMDM Disease mutations372
Blocks (Seattle)ARCN1
SuperfamilyP48444
Human Protein AtlasENSG00000095139
Peptide AtlasP48444
HPRD02893
IPIIPI00514053   IPI00439944   IPI00915422   IPI00298520   IPI00984360   
Protein Interaction databases
DIP (DOE-UCLA)P48444
IntAct (EBI)P48444
FunCoupENSG00000095139
BioGRIDARCN1
STRING (EMBL)ARCN1
ZODIACARCN1
Ontologies - Pathways
QuickGOP48444
Ontology : AmiGOGolgi membrane  RNA binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  adult locomotory behavior  membrane  cerebellar Purkinje cell layer maturation  COPI vesicle coat  transport vesicle  COPI-coated vesicle  pigmentation  
Ontology : EGO-EBIGolgi membrane  RNA binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  adult locomotory behavior  membrane  cerebellar Purkinje cell layer maturation  COPI vesicle coat  transport vesicle  COPI-coated vesicle  pigmentation  
NDEx NetworkARCN1
Atlas of Cancer Signalling NetworkARCN1
Wikipedia pathwaysARCN1
Orthology - Evolution
OrthoDB372
GeneTree (enSembl)ENSG00000095139
Phylogenetic Trees/Animal Genes : TreeFamARCN1
HOVERGENP48444
HOGENOMP48444
Homologs : HomoloGeneARCN1
Homology/Alignments : Family Browser (UCSC)ARCN1
Gene fusions - Rearrangements
Fusion : MitelmanCADM1/ARCN1 [11q23.3/11q23.3]  [t(11;11)(q23;q23)]  
Fusion: TCGACADM1 11q23.3 ARCN1 11q23.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARCN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARCN1
dbVarARCN1
ClinVarARCN1
1000_GenomesARCN1 
Exome Variant ServerARCN1
ExAC (Exome Aggregation Consortium)ARCN1 (select the gene name)
Genetic variants : HAPMAP372
Genomic Variants (DGV)ARCN1 [DGVbeta]
DECIPHERARCN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARCN1 
Mutations
ICGC Data PortalARCN1 
TCGA Data PortalARCN1 
Broad Tumor PortalARCN1
OASIS PortalARCN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARCN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARCN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARCN1
DgiDB (Drug Gene Interaction Database)ARCN1
DoCM (Curated mutations)ARCN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARCN1 (select a term)
intoGenARCN1
Cancer3DARCN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600820    617164   
Orphanet
MedgenARCN1
Genetic Testing Registry ARCN1
NextProtP48444 [Medical]
TSGene372
GENETestsARCN1
Target ValidationARCN1
Huge Navigator ARCN1 [HugePedia]
snp3D : Map Gene to Disease372
BioCentury BCIQARCN1
ClinGenARCN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD372
Chemical/Pharm GKB GenePA24931
Clinical trialARCN1
Miscellaneous
canSAR (ICR)ARCN1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARCN1
EVEXARCN1
GoPubMedARCN1
iHOPARCN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:57:46 CEST 2017

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